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Started by upstream project "BIOFORMATS-test-repo" build number 72 originally caused by: Started by upstream project "Trigger" build number 80 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5986013202382492918.sh + '[' apng = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10924_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:18:40,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:18:40,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:18:40,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:40,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:40,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:18:40,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:18:40,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:18:40,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:40,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:40,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:18:40,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:18:40,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:18:41,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:41,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:41,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:41,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:41,153 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:41,153 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:41,154 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:41,154 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:41,154 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:18:41,155 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:18:41,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-23 02:18:41,165] [main] java.version = 21 [testng] 02:18:41,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:41,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:41,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-23_02-18-41.log] [testng] 02:18:41,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-23 02:18:41,234] [main] testng.directory = /data [testng] [2024-05-23 02:18:41,235] [main] testng.configDirectory = /config [testng] [2024-05-23 02:18:41,243] [main] testng.multiplier = 1.0 [testng] [2024-05-23 02:18:41,243] [main] testng.in-memory = false [testng] [2024-05-23 02:18:41,243] [main] testng.allow-missing = false [testng] [2024-05-23 02:18:41,244] [main] user.language = en [testng] [2024-05-23 02:18:41,244] [main] user.country = ${user.country} [testng] [2024-05-23 02:18:41,244] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-23 02:18:41,659] [main] ---------------------------------------- [testng] [2024-05-23 02:18:41,659] [main] Total files: 21 [testng] [2024-05-23 02:18:41,659] [main] Scan time: 0.415 s (19 ms/file) [testng] [2024-05-23 02:18:41,659] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-23 02:18:42,718] [pool-1-thread-1] Initializing /data/samples/william_wong05.png: [testng] 02:18:42,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:42,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-23_02-18-42.log] [testng] 02:18:42,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5217565b - End of configuration. [testng] [2024-05-23 02:18:42,734] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:18:42,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:42,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-23_02-18-42.log] [testng] 02:18:42,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5fed2e - End of configuration. [testng] [2024-05-23 02:18:42,749] [pool-1-thread-11] Initializing /data/samples/MoonPhases.png: [testng] 02:18:42,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:42,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-23_02-18-42.log] [testng] 02:18:42,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26587460 - End of configuration. [testng] [2024-05-23 02:18:42,760] [pool-1-thread-10] Initializing /data/samples/william_wong04.png: [testng] 02:18:42,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:42,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-23_02-18-42.log] [testng] 02:18:42,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5517ae99 - End of configuration. [testng] [2024-05-23 02:18:42,767] [pool-1-thread-9] Initializing /data/samples/Matrix.png: [testng] 02:18:42,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:42,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-23_02-18-42.log] [testng] 02:18:42,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a27eab2 - End of configuration. [testng] [2024-05-23 02:18:42,772] [pool-1-thread-8] Initializing /data/samples/orbit.png: [testng] 02:18:42,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:42,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-23_02-18-42.log] [testng] 02:18:42,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590dbcd2 - End of configuration. [testng] [2024-05-23 02:18:42,779] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 02:18:42,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:42,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-23_02-18-42.log] [testng] 02:18:42,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@776939b7 - End of configuration. [testng] [2024-05-23 02:18:42,789] [pool-1-thread-6] Initializing /data/samples/william_wong02.png: [testng] 02:18:42,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:42,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-23_02-18-42.log] [testng] 02:18:42,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf38e67 - End of configuration. [testng] [2024-05-23 02:18:42,798] [pool-1-thread-5] Initializing /data/qa-7473/n.tif: [testng] 02:18:42,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:42,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-23_02-18-42.log] [testng] 02:18:42,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62064384 - End of configuration. [testng] [2024-05-23 02:18:42,831] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] 02:18:42,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:42,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-23_02-18-42.log] [testng] 02:18:42,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b1a18f - End of configuration. [testng] [2024-05-23 02:18:42,837] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] 02:18:42,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:42,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-23_02-18-42.log] [testng] 02:18:42,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e920845 - End of configuration. [testng] [2024-05-23 02:18:42,844] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 02:18:42,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:42,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:42,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-23_02-18-42.log] [testng] 02:18:42,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a52e6d - End of configuration. [testng] [2024-05-23 02:18:43,922] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] [2024-05-23 02:18:43,927] [pool-1-thread-1] Initializing /data/qa-7473/x.png: [testng] [2024-05-23 02:18:43,931] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] [2024-05-23 02:18:44,292] [pool-1-thread-6] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-05-23 02:18:44,297] [pool-1-thread-8] Initializing /data/samples/william_wong01.png: [testng] [2024-05-23 02:18:44,303] [pool-1-thread-10] Initializing /data/samples/StarV838.png: [testng] [2024-05-23 02:18:44,308] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-05-23 02:18:44,315] [pool-1-thread-11] Initializing /data/colin/test.sfstdge.png: [testng] [2024-05-23 02:18:44,318] [pool-1-thread-7] Initializing /data/samples/Sun.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS