![[Jenkins]](/jenkins/static/dbd9644a/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins3200554019915184402.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10972_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:21:29,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:29,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:29,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:29,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:29,612 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:29,612 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:29,612 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:29,613 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:29,613 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:21:29,614 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:21:29,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 514 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 01:21:29,626] [main] java.version = 1.8.0_342 [testng] 01:21:29,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:29,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-21-29.log] [testng] 01:21:29,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 01:21:29,687] [main] testng.directory = /data [testng] [2024-05-24 01:21:29,687] [main] testng.configDirectory = /config [testng] [2024-05-24 01:21:29,701] [main] testng.multiplier = 1.0 [testng] [2024-05-24 01:21:29,701] [main] testng.in-memory = false [testng] [2024-05-24 01:21:29,702] [main] testng.allow-missing = false [testng] [2024-05-24 01:21:29,702] [main] user.language = en [testng] [2024-05-24 01:21:29,702] [main] user.country = ${user.country} [testng] [2024-05-24 01:21:29,702] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 01:21:53,263] [main] ---------------------------------------- [testng] [2024-05-24 01:21:53,264] [main] Total files: 283 [testng] [2024-05-24 01:21:53,264] [main] Scan time: 23.561 s (83 ms/file) [testng] [2024-05-24 01:21:53,264] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 01:31:29,291] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 01:31:29,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:29,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:29,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-31-29.log] [testng] 01:31:29,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@481aabb5 - End of configuration. [testng] [2024-05-24 01:31:29,372] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:31:29,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:29,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:29,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-31-29.log] [testng] 01:31:29,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@305884b1 - End of configuration. [testng] [2024-05-24 01:31:29,466] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 01:31:29,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:29,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:29,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-31-29.log] [testng] 01:31:29,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@567dc1f8 - End of configuration. [testng] [2024-05-24 01:31:29,537] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 01:31:29,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:29,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:29,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-31-29.log] [testng] 01:31:29,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be0a617 - End of configuration. [testng] [2024-05-24 01:31:30,372] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 01:31:30,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:30,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-31-30.log] [testng] 01:31:30,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65963f46 - End of configuration. [testng] [2024-05-24 01:31:30,439] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 01:31:30,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:30,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-31-30.log] [testng] 01:31:30,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62cf8b1a - End of configuration. [testng] [2024-05-24 01:31:30,542] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 01:31:30,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:30,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-31-30.log] [testng] 01:31:30,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a1d392 - End of configuration. [testng] [2024-05-24 01:31:30,647] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 01:31:30,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:30,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-31-30.log] [testng] 01:31:30,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@799b275d - End of configuration. [testng] [2024-05-24 01:31:30,732] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 01:31:30,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:30,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-31-30.log] [testng] 01:31:30,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e9a4169 - End of configuration. [testng] [2024-05-24 01:31:30,992] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:31:30,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:30,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-31-30.log] [testng] 01:31:30,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29104d0c - End of configuration. [testng] [2024-05-24 01:31:31,060] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:31:31,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:31,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:31,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-31-31.log] [testng] 01:31:31,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4ea91b - End of configuration. [testng] [2024-05-24 01:31:31,081] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 01:31:31,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:31,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:31,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-31-31.log] [testng] 01:31:31,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a28cd0c - End of configuration. [testng] [2024-05-24 01:31:33,819] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-05-24 01:31:34,362] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-05-24 01:31:34,421] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-05-24 01:31:34,735] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-05-24 01:31:34,776] [pool-1-thread-9] Initializing /data/olympus/XYZt.vsi: [testng] [2024-05-24 01:31:34,804] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-05-24 01:31:34,999] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-05-24 01:31:35,038] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-05-24 01:31:35,435] [pool-1-thread-2] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-05-24 01:31:36,076] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-05-24 01:31:36,224] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-05-24 01:31:36,480] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-05-24 01:31:43,617] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-05-24 01:31:43,750] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-05-24 01:31:43,831] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-05-24 01:31:44,575] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-05-24 01:31:45,476] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-05-24 01:31:45,534] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-05-24 01:31:45,593] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-05-24 01:31:45,899] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-05-24 01:31:46,649] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-05-24 01:31:46,722] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-05-24 01:31:47,511] [pool-1-thread-5] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-05-24 01:31:47,692] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-05-24 01:31:48,090] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-05-24 01:31:48,249] [pool-1-thread-9] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-05-24 01:32:15,604] [pool-1-thread-3] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-05-24 01:32:15,837] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-05-24 01:32:16,826] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-05-24 01:32:17,589] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-05-24 01:32:17,649] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-05-24 01:32:17,882] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-05-24 01:32:18,085] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-05-24 01:32:18,151] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-05-24 01:32:18,482] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-05-24 01:32:18,578] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-05-24 01:32:18,797] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-05-24 01:32:18,929] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-05-24 01:32:19,627] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-05-24 01:32:19,724] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-05-24 01:32:20,275] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-05-24 01:32:20,740] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-05-24 01:32:20,800] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-05-24 01:32:22,245] [pool-1-thread-10] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-05-24 01:32:22,964] [pool-1-thread-2] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-05-24 01:32:23,050] [pool-1-thread-5] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-05-24 01:32:23,162] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-05-24 01:32:23,943] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-05-24 01:32:24,050] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-05-24 01:32:25,672] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-05-24 01:32:26,136] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-05-24 01:32:26,505] [pool-1-thread-3] Initializing /data/qa-17919/f10187.oir: [testng] [2024-05-24 01:32:56,869] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-05-24 01:32:57,018] [pool-1-thread-7] Initializing /data/qa-17270/image1.oir: [testng] [2024-05-24 01:32:57,504] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-05-24 01:32:57,914] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-05-24 01:32:58,571] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-05-24 01:32:58,990] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-05-24 01:32:59,133] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-05-24 01:32:59,690] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-05-24 01:33:02,073] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-05-24 01:33:02,247] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-05-24 01:33:02,643] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-05-24 01:33:02,706] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-05-24 01:33:03,567] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-05-24 01:33:03,767] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-05-24 01:33:03,811] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-05-24 01:33:05,545] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-05-24 01:33:07,078] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-05-24 01:33:07,273] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-05-24 01:33:07,547] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-05-24 01:33:08,482] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-05-24 01:33:08,533] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-05-24 01:33:10,588] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir: [testng] [2024-05-24 01:33:16,234] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-05-24 01:33:17,552] [pool-1-thread-4] Initializing /data/olympus/XYZt.oir: [testng] [2024-05-24 01:33:28,070] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-05-24 01:33:28,759] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-05-24 01:33:28,870] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-05-24 01:33:30,836] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-05-24 01:33:32,876] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-05-24 01:33:34,259] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-05-24 01:33:35,602] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-05-24 01:33:36,778] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-05-24 01:33:38,172] [pool-1-thread-5] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-05-24 01:33:56,114] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-05-24 01:33:56,424] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-05-24 01:33:57,808] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-05-24 01:33:57,998] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-05-24 01:33:58,586] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-05-24 01:33:59,007] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-05-24 01:33:59,783] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-05-24 01:34:00,136] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-05-24 01:34:00,287] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-05-24 01:34:00,512] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-05-24 01:34:01,030] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-05-24 01:34:05,278] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-05-24 01:34:05,627] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-05-24 01:34:06,477] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-05-24 01:34:10,006] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-05-24 01:34:10,762] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-05-24 01:34:11,472] [pool-1-thread-1] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-05-24 01:34:14,959] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-05-24 01:34:15,098] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-05-24 01:34:16,705] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-05-24 01:34:16,901] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-05-24 01:34:17,923] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-05-24 01:34:18,060] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-05-24 01:34:18,621] [pool-1-thread-12] Initializing /data/qa-17917/f10010.oir: [testng] [2024-05-24 01:35:07,076] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-05-24 01:35:07,593] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-05-24 01:35:11,390] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-05-24 01:35:23,813] [pool-1-thread-8] Initializing /data/qa-17335/1.oir: [testng] [2024-05-24 01:35:24,503] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-05-24 01:35:25,718] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-05-24 01:35:26,443] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-05-24 01:35:27,308] [pool-1-thread-8] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-05-24 01:35:28,459] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-05-24 01:35:29,698] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-05-24 01:35:30,854] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-05-24 01:35:32,015] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-05-24 01:35:33,171] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-05-24 01:35:47,006] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-05-24 01:35:56,011] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-05-24 01:35:59,898] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-05-24 01:35:59,947] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-05-24 01:36:01,085] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-05-24 01:36:01,232] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-05-24 01:36:03,523] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-05-24 01:36:04,595] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-05-24 01:36:06,617] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-05-24 01:36:08,627] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-05-24 01:36:18,079] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-05-24 01:36:19,908] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-05-24 01:36:21,052] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-05-24 01:36:22,025] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-05-24 01:36:22,627] [pool-1-thread-2] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-05-24 01:36:23,590] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-05-24 01:36:24,708] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-05-24 01:36:26,002] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-05-24 01:36:27,607] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-05-24 01:36:28,255] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-05-24 01:36:29,002] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-05-24 01:36:29,518] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-05-24 01:36:31,268] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-05-24 01:36:32,827] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-05-24 01:36:33,415] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-05-24 01:36:34,125] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-05-24 01:36:35,180] [pool-1-thread-2] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-05-24 01:36:38,498] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-05-24 01:36:39,700] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-05-24 01:36:40,664] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-05-24 01:36:41,786] [pool-1-thread-6] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-05-24 01:38:50,734] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-05-24 01:39:17,217] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-05-24 01:39:18,026] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-05-24 01:39:19,516] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-05-24 01:39:21,170] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-05-24 01:39:22,229] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-05-24 01:39:23,417] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-05-24 01:39:24,157] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-05-24 01:39:25,511] [pool-1-thread-1] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-05-24 01:39:31,221] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-05-24 01:39:44,492] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-05-24 01:39:46,403] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-05-24 01:39:48,399] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-05-24 01:39:49,669] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-05-24 01:39:51,062] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-05-24 01:39:58,453] [pool-1-thread-5] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-05-24 01:39:59,743] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-05-24 01:40:00,780] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-05-24 01:40:02,227] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-05-24 01:40:03,331] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-05-24 01:40:04,563] [pool-1-thread-2] Initializing /data/qa-16871/Clipboard.tif: [testng] 02:40:24,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:40:24,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:24,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_02-40-24.log] [testng] 02:40:24,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 78 minutes 59 seconds Finished: SUCCESS