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Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4962272493601551221.sh + '[' visitech = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10978_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:15,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:15,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:15,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:15,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:15,307 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:15,308 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:15,308 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:15,309 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:15,309 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:22:15,310 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:22:15,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 456 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 01:22:15,326] [main] java.version = 1.8.0_342 [testng] 01:22:15,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:15,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:15,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-22-15.log] [testng] 01:22:15,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 01:22:15,419] [main] testng.directory = /data [testng] [2024-05-24 01:22:15,419] [main] testng.configDirectory = /config [testng] [2024-05-24 01:22:15,433] [main] testng.multiplier = 1.0 [testng] [2024-05-24 01:22:15,433] [main] testng.in-memory = false [testng] [2024-05-24 01:22:15,434] [main] testng.allow-missing = false [testng] [2024-05-24 01:22:15,434] [main] user.language = en [testng] [2024-05-24 01:22:15,434] [main] user.country = ${user.country} [testng] [2024-05-24 01:22:15,434] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 01:22:16,841] [main] ---------------------------------------- [testng] [2024-05-24 01:22:16,841] [main] Total files: 45 [testng] [2024-05-24 01:22:16,841] [main] Scan time: 1.407 s (31 ms/file) [testng] [2024-05-24 01:22:16,841] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 01:22:23,196] [pool-1-thread-1] Initializing /data/scott/2 channel_Z_timelaps/525.tif: [testng] 01:22:23,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:23,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-22-23.log] [testng] 01:22:23,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d2a3889 - End of configuration. [testng] [2024-05-24 01:22:23,258] [pool-1-thread-12] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html: [testng] 01:22:23,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:23,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-22-23.log] [testng] 01:22:23,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7206fd - End of configuration. [testng] [2024-05-24 01:22:23,301] [pool-1-thread-11] Initializing /data/brian/060916-01-561.tif: [testng] 01:22:23,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:23,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-22-23.log] [testng] 01:22:23,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@283fe409 - End of configuration. [testng] [2024-05-24 01:22:23,390] [pool-1-thread-10] Initializing /data/oliver/20x/488 Report.html: [testng] 01:22:23,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:23,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-22-23.log] [testng] 01:22:23,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f600fde - End of configuration. [testng] [2024-05-24 01:22:23,504] [pool-1-thread-9] Initializing /data/brian/ScreenShot.jpg: [testng] 01:22:23,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:23,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-22-23.log] [testng] 01:22:23,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6645442f - End of configuration. [testng] [2024-05-24 01:22:23,576] [pool-1-thread-8] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html: [testng] 01:22:23,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:23,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-22-23.log] [testng] 01:22:23,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c562aa0 - End of configuration. [testng] [2024-05-24 01:22:23,602] [pool-1-thread-7] Initializing /data/brian/070613reA1_2 Report.html: [testng] 01:22:23,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:23,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-22-23.log] [testng] 01:22:23,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@247b341e - End of configuration. [testng] [2024-05-24 01:22:23,616] [pool-1-thread-6] Initializing /data/brian/060916-01-488.tif: [testng] 01:22:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-22-23.log] [testng] 01:22:23,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132e7699 - End of configuration. [testng] [2024-05-24 01:22:23,730] [pool-1-thread-5] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html: [testng] 01:22:23,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:23,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-22-23.log] [testng] 01:22:23,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b134b39 - End of configuration. [testng] [2024-05-24 01:22:23,755] [pool-1-thread-4] Initializing /data/oliver/20x/491 Report.html: [testng] 01:22:23,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:23,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-22-23.log] [testng] 01:22:23,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20afe920 - End of configuration. [testng] [2024-05-24 01:22:23,877] [pool-1-thread-3] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html: [testng] 01:22:23,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:23,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-22-23.log] [testng] 01:22:23,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fed3889 - End of configuration. [testng] [2024-05-24 01:22:23,988] [pool-1-thread-2] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html: [testng] 01:22:23,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:23,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-22-23.log] [testng] 01:22:23,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78237ee9 - End of configuration. [testng] [2024-05-24 01:22:25,732] [pool-1-thread-7] Initializing /data/scott/2 channel_Z_timelaps/597.tif: [testng] [2024-05-24 01:22:25,788] [pool-1-thread-1] Initializing /data/brian/060916-01 Report.html: [testng] [2024-05-24 01:22:26,228] [pool-1-thread-9] Initializing /data/kazem/noname Report.html: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 27 seconds Finished: SUCCESS