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Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins6494897863905342249.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10986_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:24:25,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:25,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:25,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:25,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:25,280 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:25,280 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:25,280 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:25,281 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:25,281 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:24:25,283 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:24:25,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 454 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 01:24:25,299] [main] java.version = 1.8.0_342 [testng] 01:24:25,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:25,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:25,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-24-25.log] [testng] 01:24:25,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 01:24:25,364] [main] testng.directory = /data [testng] [2024-05-24 01:24:25,364] [main] testng.configDirectory = /config [testng] [2024-05-24 01:24:25,379] [main] testng.multiplier = 1.0 [testng] [2024-05-24 01:24:25,379] [main] testng.in-memory = false [testng] [2024-05-24 01:24:25,379] [main] testng.allow-missing = false [testng] [2024-05-24 01:24:25,379] [main] user.language = en [testng] [2024-05-24 01:24:25,379] [main] user.country = ${user.country} [testng] [2024-05-24 01:24:25,379] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 01:24:26,087] [main] ---------------------------------------- [testng] [2024-05-24 01:24:26,087] [main] Total files: 31 [testng] [2024-05-24 01:24:26,087] [main] Scan time: 0.707 s (22 ms/file) [testng] [2024-05-24 01:24:26,087] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 01:24:28,551] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:24:28,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:28,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-24-28.log] [testng] 01:24:28,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e89ea27 - End of configuration. [testng] [2024-05-24 01:24:28,581] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:24:28,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:28,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-24-28.log] [testng] 01:24:28,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da0ca2a - End of configuration. [testng] [2024-05-24 01:24:28,593] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:24:28,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:28,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-24-28.log] [testng] 01:24:28,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6712d145 - End of configuration. [testng] [2024-05-24 01:24:28,602] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:24:28,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:28,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-24-28.log] [testng] 01:24:28,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f531603 - End of configuration. [testng] [2024-05-24 01:24:28,611] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:24:28,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:28,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-24-28.log] [testng] 01:24:28,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a7830b4 - End of configuration. [testng] [2024-05-24 01:24:28,625] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:24:28,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:28,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-24-28.log] [testng] 01:24:28,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed47ee7 - End of configuration. [testng] [2024-05-24 01:24:28,655] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:24:28,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:28,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-24-28.log] [testng] 01:24:28,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@186a598 - End of configuration. [testng] [2024-05-24 01:24:28,670] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:24:28,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:28,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-24-28.log] [testng] 01:24:28,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89d2fc3 - End of configuration. [testng] [2024-05-24 01:24:28,683] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:24:28,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:28,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-24-28.log] [testng] 01:24:28,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64b35cae - End of configuration. [testng] [2024-05-24 01:24:28,697] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:24:28,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:28,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-24-28.log] [testng] 01:24:28,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4335176e - End of configuration. [testng] [2024-05-24 01:24:28,727] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:24:28,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:28,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-24-28.log] [testng] 01:24:28,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@400e28d0 - End of configuration. [testng] [2024-05-24 01:24:28,737] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:24:28,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:28,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:28,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-24-28.log] [testng] 01:24:28,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b3e79ac - End of configuration. [testng] [2024-05-24 01:24:30,709] [pool-1-thread-3] Initializing /data/curtis/image1.bmp: [testng] [2024-05-24 01:24:30,713] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-05-24 01:24:30,719] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-05-24 01:24:30,725] [pool-1-thread-11] Initializing /data/curtis/image2.bmp: [testng] [2024-05-24 01:24:30,731] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-05-24 01:24:30,741] [pool-1-thread-2] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-05-24 01:24:30,750] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-05-24 01:24:30,759] [pool-1-thread-7] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-05-24 01:24:31,284] [pool-1-thread-1] Initializing /data/stephane/holo0908.bmp: [testng] [2024-05-24 01:24:31,474] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-05-24 01:24:31,774] [pool-1-thread-3] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-05-24 01:24:32,109] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-05-24 01:24:32,115] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-05-24 01:24:32,121] [pool-1-thread-6] Initializing /data/curtis/image4.bmp: [testng] [2024-05-24 01:24:32,125] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-05-24 01:24:32,132] [pool-1-thread-8] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-05-24 01:24:32,390] [pool-1-thread-6] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-05-24 01:24:32,568] [pool-1-thread-11] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-05-24 01:24:32,580] [pool-1-thread-10] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS