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Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11597844692200066702.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10988_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:00,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:00,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:00,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:00,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:00,234 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:00,234 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:00,235 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:00,235 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:00,235 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:25:00,237 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:25:00,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 515 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 01:25:00,253] [main] java.version = 1.8.0_342 [testng] 01:25:00,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:00,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:00,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-25-00.log] [testng] 01:25:00,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 01:25:00,382] [main] testng.directory = /data [testng] [2024-05-24 01:25:00,382] [main] testng.configDirectory = /config [testng] [2024-05-24 01:25:00,407] [main] testng.multiplier = 1.0 [testng] [2024-05-24 01:25:00,408] [main] testng.in-memory = false [testng] [2024-05-24 01:25:00,408] [main] testng.allow-missing = false [testng] [2024-05-24 01:25:00,408] [main] user.language = en [testng] [2024-05-24 01:25:00,408] [main] user.country = ${user.country} [testng] [2024-05-24 01:25:00,408] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 01:25:13,767] [main] ---------------------------------------- [testng] [2024-05-24 01:25:13,767] [main] Total files: 226 [testng] [2024-05-24 01:25:13,768] [main] Scan time: 13.359 s (59 ms/file) [testng] [2024-05-24 01:25:13,768] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 01:25:22,678] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:25:22,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:22,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_01-25-22.log] [testng] 01:25:22,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c441846 - End of configuration. [testng] [2024-05-24 01:25:22,789] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:25:22,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:22,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_01-25-22.log] [testng] 01:25:22,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@352fbcc6 - End of configuration. [testng] [2024-05-24 01:25:22,804] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:25:22,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:22,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_01-25-22.log] [testng] 01:25:22,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@641933db - End of configuration. [testng] [2024-05-24 01:25:22,828] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:25:22,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:22,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_01-25-22.log] [testng] 01:25:22,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2211a711 - End of configuration. [testng] [2024-05-24 01:25:22,840] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:25:22,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:22,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_01-25-22.log] [testng] 01:25:22,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48de7e5e - End of configuration. [testng] [2024-05-24 01:25:22,896] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:25:22,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:22,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_01-25-22.log] [testng] 01:25:22,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3006cd22 - End of configuration. [testng] [2024-05-24 01:25:22,946] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:25:22,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:22,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_01-25-22.log] [testng] 01:25:22,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39be58d6 - End of configuration. [testng] [2024-05-24 01:25:22,988] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:25:22,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:22,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:22,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_01-25-22.log] [testng] 01:25:22,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@208d5986 - End of configuration. [testng] [2024-05-24 01:25:23,001] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:25:23,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:23,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:23,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_01-25-23.log] [testng] 01:25:23,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc5314 - End of configuration. [testng] [2024-05-24 01:25:23,094] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:25:23,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:23,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:23,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_01-25-23.log] [testng] 01:25:23,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56d064 - End of configuration. [testng] [2024-05-24 01:25:23,102] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:25:23,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:23,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:23,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_01-25-23.log] [testng] 01:25:23,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab77ca2 - End of configuration. [testng] [2024-05-24 01:25:23,111] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:25:23,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:23,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:23,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_01-25-23.log] [testng] 01:25:23,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ec5b491 - End of configuration. [testng] [2024-05-24 01:25:25,170] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-05-24 01:25:25,235] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-05-24 01:25:25,262] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-05-24 01:25:25,274] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-05-24 01:25:25,306] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-05-24 01:25:25,387] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-05-24 01:25:25,396] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-05-24 01:25:25,405] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-05-24 01:25:25,420] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-05-24 01:25:25,452] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-05-24 01:25:25,724] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-05-24 01:25:25,850] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-05-24 01:25:25,887] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-05-24 01:25:25,927] [pool-1-thread-9] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-05-24 01:25:26,039] [pool-1-thread-6] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-05-24 01:25:26,199] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS