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Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7417273731899788537.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11046_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:58:06,643 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:58:06,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:58:06,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:06,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:06,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:58:06,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:58:06,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:58:06,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:06,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:06,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:58:06,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:58:06,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:58:06,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:58:06,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:58:06,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:58:06,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:58:06,915 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:58:06,915 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:58:06,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:58:06,916 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:58:06,916 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:58:06,917 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:58:06,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 01:58:06,927] [main] java.version = 1.8.0_342 [testng] 01:58:06,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:58:06,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:06,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_01-58-06.log] [testng] 01:58:06,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 01:58:06,980] [main] testng.directory = /data [testng] [2024-05-24 01:58:06,980] [main] testng.configDirectory = /config [testng] [2024-05-24 01:58:06,993] [main] testng.multiplier = 1.0 [testng] [2024-05-24 01:58:06,993] [main] testng.in-memory = false [testng] [2024-05-24 01:58:06,993] [main] testng.allow-missing = false [testng] [2024-05-24 01:58:06,994] [main] user.language = en [testng] [2024-05-24 01:58:06,994] [main] user.country = ${user.country} [testng] [2024-05-24 01:58:06,994] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 02:04:36,704] [main] ---------------------------------------- [testng] [2024-05-24 02:04:36,704] [main] Total files: 7329 [testng] [2024-05-24 02:04:36,704] [main] Scan time: 389.709 s (53 ms/file) [testng] [2024-05-24 02:04:36,704] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 02:08:02,943] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 02:08:02,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:02,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:02,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_02-08-02.log] [testng] 02:08:02,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea05b43 - End of configuration. [testng] [2024-05-24 02:08:02,999] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 02:08:02,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:02,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_02-08-03.log] [testng] 02:08:03,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e66531d - End of configuration. [testng] [2024-05-24 02:08:03,032] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 02:08:03,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:03,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_02-08-03.log] [testng] 02:08:03,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a61d3e5 - End of configuration. [testng] [2024-05-24 02:08:03,085] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:08:03,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:03,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_02-08-03.log] [testng] 02:08:03,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70388a18 - End of configuration. [testng] [2024-05-24 02:08:03,157] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 02:08:03,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:03,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_02-08-03.log] [testng] 02:08:03,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c6e559 - End of configuration. [testng] [2024-05-24 02:08:03,299] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 02:08:03,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:03,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_02-08-03.log] [testng] 02:08:03,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@621f766 - End of configuration. [testng] [2024-05-24 02:08:03,330] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 02:08:03,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:03,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_02-08-03.log] [testng] 02:08:03,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cb74ddd - End of configuration. [testng] [2024-05-24 02:08:03,407] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 02:08:03,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:03,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_02-08-03.log] [testng] 02:08:03,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a69d657 - End of configuration. [testng] [2024-05-24 02:08:03,582] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 02:08:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_02-08-03.log] [testng] 02:08:03,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d2ea817 - End of configuration. [testng] [2024-05-24 02:08:03,647] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:08:03,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:03,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_02-08-03.log] [testng] 02:08:03,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f4a275 - End of configuration. [testng] [2024-05-24 02:08:03,751] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:08:03,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:03,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_02-08-03.log] [testng] 02:08:03,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f537bf3 - End of configuration. [testng] [2024-05-24 02:08:03,920] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 02:08:03,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:03,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:03,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_02-08-03.log] [testng] 02:08:03,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e20718d - End of configuration. [testng] [2024-05-24 02:08:07,279] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-05-24 02:08:08,146] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-24 02:08:08,498] [pool-1-thread-1] Initializing /data/josh/2101to600b.stk: [testng] [2024-05-24 02:08:09,748] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-24 02:08:10,371] [pool-1-thread-6] Initializing /data/samples/10xcalib.stk: [testng] [2024-05-24 02:08:10,639] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-24 02:08:10,691] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-05-24 02:08:11,235] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-05-24 02:08:11,507] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-05-24 02:08:11,627] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-05-24 02:08:12,111] [pool-1-thread-8] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-24 02:08:12,509] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-05-24 02:08:12,565] [pool-1-thread-5] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-05-24 02:08:13,154] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-05-24 02:08:13,208] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-24 02:08:13,499] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-24 02:08:13,975] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-05-24 02:08:14,078] [pool-1-thread-2] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-24 02:08:15,496] [pool-1-thread-5] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-05-24 02:08:15,787] [pool-1-thread-6] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-24 02:08:16,596] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-05-24 02:08:17,091] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-05-24 02:08:17,152] [pool-1-thread-10] Used files list does not include base file [testng] [2024-05-24 02:08:17,153] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-24 02:08:17,429] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-24 02:08:17,453] [pool-1-thread-12] Used files list does not include base file [testng] [2024-05-24 02:08:17,581] [pool-1-thread-3] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-24 02:08:17,770] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-05-24 02:08:17,886] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-05-24 02:08:18,042] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-24 02:08:18,097] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-24 02:08:18,099] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-05-24 02:08:18,318] [pool-1-thread-5] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-05-24 02:08:18,512] [pool-1-thread-7] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-05-24 02:08:18,670] [pool-1-thread-6] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-05-24 02:08:19,281] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-24 02:08:19,355] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-05-24 02:08:19,668] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-05-24 02:08:19,928] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-24 02:08:19,951] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-24 02:08:20,059] [pool-1-thread-12] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-05-24 02:08:29,623] [pool-1-thread-8] Initializing /data/josh/2101to800.stk: [testng] [2024-05-24 02:08:30,659] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-24 02:08:30,880] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-05-24 02:08:31,233] [pool-1-thread-6] Initializing /data/jerome/deconv.STK: [testng] [2024-05-24 02:08:31,589] [pool-1-thread-5] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-05-24 02:08:31,682] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-05-24 02:08:31,904] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-24 02:08:32,215] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-05-24 02:08:32,868] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-05-24 02:08:33,361] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:08:33,599] [pool-1-thread-1] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-24 02:08:34,586] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-24 02:08:34,743] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2024-05-24 02:08:34,954] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-24 02:08:37,731] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:08:37,814] [pool-1-thread-6] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-24 02:08:37,977] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:08:38,129] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:08:38,764] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-24 02:08:38,788] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-24 02:08:39,083] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-05-24 02:08:40,026] [pool-1-thread-6] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-24 02:08:40,359] [pool-1-thread-11] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-24 02:08:40,712] [pool-1-thread-5] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-05-24 02:08:41,146] [pool-1-thread-3] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-05-24 02:08:41,420] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-05-24 02:08:42,049] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-05-24 02:08:42,077] [pool-1-thread-10] Used files list does not include base file [testng] [2024-05-24 02:08:42,279] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-24 02:08:43,055] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-24 02:08:43,339] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-05-24 02:08:44,436] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-05-24 02:08:44,503] [pool-1-thread-5] Used files list does not include base file [testng] [2024-05-24 02:08:44,651] [pool-1-thread-6] Initializing 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02:08:54,547] [pool-1-thread-9] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-05-24 02:08:55,205] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-24 02:08:55,724] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-05-24 02:08:56,082] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-24 02:08:56,139] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-24 02:08:56,308] [pool-1-thread-7] Initializing /data/samples/diatoms3d.stk: [testng] [2024-05-24 02:08:56,882] [pool-1-thread-7] Initializing /data/qa-16915/m-02.tif: [testng] [2024-05-24 02:08:57,719] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-24 02:08:57,901] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-05-24 02:08:58,350] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-24 02:09:00,279] [pool-1-thread-4] Initializing /data/qa-16915/m-04.tif: [testng] [2024-05-24 02:09:00,791] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-05-24 02:09:00,921] [pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-24 02:09:01,837] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:02,063] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-05-24 02:09:03,224] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:03,304] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-05-24 02:09:03,569] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-05-24 02:09:03,852] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-05-24 02:09:05,386] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-05-24 02:09:06,315] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-24 02:09:06,368] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-05-24 02:09:06,428] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-24 02:09:07,405] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-24 02:09:07,602] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-24 02:09:07,682] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-05-24 02:09:07,766] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-24 02:09:08,525] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:09,508] [pool-1-thread-4] Initializing /data/dave/Z Series.stk: [testng] [2024-05-24 02:09:09,643] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:09,872] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-24 02:09:10,116] [pool-1-thread-5] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-05-24 02:09:10,632] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-24 02:09:10,796] [pool-1-thread-5] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-05-24 02:09:11,612] [pool-1-thread-9] Initializing /data/ascb/golgi marker.tif: [testng] [2024-05-24 02:09:12,347] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-05-24 02:09:13,402] [pool-1-thread-8] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-05-24 02:09:13,721] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-05-24 02:09:13,805] [pool-1-thread-11] Initializing /data/josh/2101to600astk.stk: [testng] [2024-05-24 02:09:22,553] [pool-1-thread-6] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-05-24 02:09:22,768] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-05-24 02:09:23,074] [pool-1-thread-5] Initializing /data/samples/zserEight.stk: [testng] [2024-05-24 02:09:23,209] [pool-1-thread-4] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-05-24 02:09:24,174] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-05-24 02:09:24,236] [pool-1-thread-5] Initializing /data/samples/10xcalib.tif: [testng] [2024-05-24 02:09:24,430] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-05-24 02:09:24,491] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-24 02:09:24,566] [pool-1-thread-9] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-05-24 02:09:24,610] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-05-24 02:09:26,725] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-05-24 02:09:26,898] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-05-24 02:09:27,072] [pool-1-thread-6] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-05-24 02:09:27,666] [pool-1-thread-9] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-05-24 02:09:27,954] [pool-1-thread-12] Initializing 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/data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:31,473] [pool-1-thread-12] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-24 02:09:31,510] [pool-1-thread-6] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-05-24 02:09:31,572] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-24 02:09:31,625] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-24 02:09:32,000] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:32,143] [pool-1-thread-7] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-05-24 02:09:32,241] [pool-1-thread-12] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-24 02:09:32,859] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-05-24 02:09:33,537] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-24 02:09:33,607] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-24 02:09:33,640] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-24 02:09:33,905] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-05-24 02:09:33,972] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-24 02:09:34,042] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-05-24 02:09:34,099] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-24 02:09:34,228] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-05-24 02:09:34,436] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-24 02:09:34,506] [pool-1-thread-9] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-05-24 02:09:34,702] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-24 02:09:35,152] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-24 02:09:35,264] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:35,633] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-05-24 02:09:35,941] [pool-1-thread-6] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-24 02:09:36,216] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-05-24 02:09:37,296] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-05-24 02:09:37,342] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-24 02:09:37,353] [pool-1-thread-5] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-05-24 02:09:37,426] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-05-24 02:09:37,493] [pool-1-thread-3] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-05-24 02:09:37,568] [pool-1-thread-7] Initializing /data/samples/zser24.stk: [testng] [2024-05-24 02:09:37,598] [pool-1-thread-12] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-05-24 02:09:38,105] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-05-24 02:09:38,207] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:38,654] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-24 02:09:38,837] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-24 02:09:38,923] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-05-24 02:09:39,438] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-05-24 02:09:39,731] [pool-1-thread-1] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-05-24 02:09:44,802] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-05-24 02:09:44,857] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-24 02:09:44,931] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] [2024-05-24 02:09:44,980] [pool-1-thread-4] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-05-24 02:09:45,030] [pool-1-thread-12] Initializing /data/grant/X.STK: [testng] [2024-05-24 02:09:45,440] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-24 02:09:45,822] [pool-1-thread-5] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-24 02:09:46,923] [pool-1-thread-4] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-24 02:09:48,402] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-24 02:09:49,337] [pool-1-thread-6] Initializing /data/aaron/metamorph.stk: [testng] [2024-05-24 02:09:49,875] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-24 02:09:50,504] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-05-24 02:09:50,584] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-24 02:09:51,248] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-05-24 02:09:51,721] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-05-24 02:09:51,842] [pool-1-thread-8] Initializing /data/thomas/test.tif: [testng] [2024-05-24 02:09:52,103] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-05-24 02:09:52,372] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-05-24 02:09:52,521] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-05-24 02:09:52,625] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-24 02:09:52,675] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-24 02:09:52,855] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2024-05-24 02:09:54,020] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 49 seconds Finished: SUCCESS