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Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12740500017767648576.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11078_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:19:57,613 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:19:57,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:19:57,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:19:57,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:19:57,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:19:57,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:19:57,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:19:57,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:19:57,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:19:57,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:19:57,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:19:57,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:19:57,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:19:57,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:19:57,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:19:57,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:19:57,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:19:57,893 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:19:57,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:19:57,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:19:57,894 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:19:57,895 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:19:57,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 02:19:57,906] [main] java.version = 1.8.0_342 [testng] 02:19:57,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:19:57,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:57,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_02-19-57.log] [testng] 02:19:57,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 02:19:57,962] [main] testng.directory = /data [testng] [2024-05-24 02:19:57,963] [main] testng.configDirectory = /config [testng] [2024-05-24 02:19:57,976] [main] testng.multiplier = 1.0 [testng] [2024-05-24 02:19:57,976] [main] testng.in-memory = false [testng] [2024-05-24 02:19:57,976] [main] testng.allow-missing = false [testng] [2024-05-24 02:19:57,976] [main] user.language = en [testng] [2024-05-24 02:19:57,976] [main] user.country = ${user.country} [testng] [2024-05-24 02:19:57,976] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 02:20:05,617] [main] ---------------------------------------- [testng] [2024-05-24 02:20:05,617] [main] Total files: 67 [testng] [2024-05-24 02:20:05,617] [main] Scan time: 7.64 s (114 ms/file) [testng] [2024-05-24 02:20:05,617] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 02:20:33,383] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 02:20:33,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:20:33,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_02-20-33.log] [testng] 02:20:33,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436fa153 - End of configuration. [testng] [2024-05-24 02:20:33,430] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims: [testng] 02:20:33,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:20:33,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_02-20-33.log] [testng] 02:20:33,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3850ac72 - End of configuration. [testng] [2024-05-24 02:20:33,453] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:20:33,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:20:33,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_02-20-33.log] [testng] 02:20:33,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124dc6f8 - End of configuration. [testng] [2024-05-24 02:20:33,465] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims: [testng] 02:20:33,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:20:33,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_02-20-33.log] [testng] 02:20:33,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b1fe05 - End of configuration. [testng] [2024-05-24 02:20:33,478] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:20:33,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:20:33,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_02-20-33.log] [testng] 02:20:33,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@444213de - End of configuration. [testng] [2024-05-24 02:20:33,516] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: [testng] 02:20:33,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:20:33,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_02-20-33.log] [testng] 02:20:33,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f86ecd - End of configuration. [testng] [2024-05-24 02:20:33,531] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims: [testng] 02:20:33,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:20:33,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_02-20-33.log] [testng] 02:20:33,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570a76b3 - End of configuration. [testng] [2024-05-24 02:20:33,564] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 02:20:33,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:20:33,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_02-20-33.log] [testng] 02:20:33,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a27c3bd - End of configuration. [testng] [2024-05-24 02:20:33,578] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims: [testng] 02:20:33,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:20:33,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_02-20-33.log] [testng] 02:20:33,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@495d6fd3 - End of configuration. [testng] [2024-05-24 02:20:33,644] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:20:33,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:20:33,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_02-20-33.log] [testng] 02:20:33,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@785fa7e9 - End of configuration. [testng] [2024-05-24 02:20:33,669] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 02:20:33,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:20:33,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_02-20-33.log] [testng] 02:20:33,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578bdcdc - End of configuration. [testng] [2024-05-24 02:20:33,701] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 02:20:33,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:20:33,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:33,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_02-20-33.log] [testng] 02:20:33,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2793b9 - End of configuration. [testng] [2024-05-24 02:20:35,870] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0012.ims: [testng] [2024-05-24 02:20:35,883] [pool-1-thread-8] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] [2024-05-24 02:20:35,954] [pool-1-thread-12] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims: [testng] [2024-05-24 02:20:36,007] [pool-1-thread-6] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] [2024-05-24 02:20:36,121] [pool-1-thread-10] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: [testng] [2024-05-24 02:20:36,154] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0010.ims: [testng] [2024-05-24 02:20:36,170] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0006.ims: [testng] [2024-05-24 02:20:36,601] [pool-1-thread-3] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-05-24 02:20:36,655] [pool-1-thread-11] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF_IMS3.ims: [testng] [2024-05-24 02:20:36,968] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0014.ims: [testng] [2024-05-24 02:20:37,078] [pool-1-thread-4] Initializing /data/qa-4898/o383_1_457_CS_r1.ims: BUILD SUCCESSFUL Total time: 1 minute 46 seconds Finished: SUCCESS