![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 7 originally caused by: Started by upstream project "Trigger" build number 10 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12550613374951005610.sh + '[' avi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1109_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:36:04,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:36:04,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 08:36:04,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:36:04,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:36:04,483 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:36:04,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:36:04,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:36:04,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:36:04,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:36:04,485 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:36:04,485 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:36:04,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:36:04,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:36:04,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:36:04,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:36:04,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:36:04,677 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:36:04,677 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:36:04,678 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:36:04,678 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:36:04,678 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 08:36:04,679 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 08:36:04,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-21 08:36:04,688] [main] java.version = 21 [testng] 08:36:04,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:36:04,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:36:04,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_08-36-04.log] [testng] 08:36:04,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-03-21 08:36:04,736] [main] testng.directory = /data [testng] [2024-03-21 08:36:04,736] [main] testng.configDirectory = /config [testng] [2024-03-21 08:36:04,745] [main] testng.multiplier = 1.0 [testng] [2024-03-21 08:36:04,745] [main] testng.in-memory = false [testng] [2024-03-21 08:36:04,745] [main] testng.allow-missing = false [testng] [2024-03-21 08:36:04,745] [main] user.language = en [testng] [2024-03-21 08:36:04,746] [main] user.country = ${user.country} [testng] [2024-03-21 08:36:04,746] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-21 08:36:07,017] [main] ---------------------------------------- [testng] [2024-03-21 08:36:07,018] [main] Total files: 40 [testng] [2024-03-21 08:36:07,018] [main] Scan time: 2.271 s (56 ms/file) [testng] [2024-03-21 08:36:07,018] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-21 08:40:13,809] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 08:40:13,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:40:13,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:13,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_08-40-13.log] [testng] 08:40:13,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b56d6c9 - End of configuration. [testng] [2024-03-21 08:40:14,075] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 08:40:14,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:40:14,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:14,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_08-40-14.log] [testng] 08:40:14,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8050c2 - End of configuration. [testng] [2024-03-21 08:40:14,308] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 08:40:14,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:40:14,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:14,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_08-40-14.log] [testng] 08:40:14,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609e5b66 - End of configuration. [testng] [2024-03-21 08:40:14,556] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] 08:40:14,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:40:14,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:14,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_08-40-14.log] [testng] 08:40:14,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5386a4af - End of configuration. [testng] [2024-03-21 08:40:14,784] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] 08:40:14,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:40:14,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:14,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_08-40-14.log] [testng] 08:40:14,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@527c272c - End of configuration. [testng] [2024-03-21 08:40:15,001] [pool-1-thread-8] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 08:40:15,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:40:15,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:15,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_08-40-15.log] [testng] 08:40:15,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c20b70 - End of configuration. [testng] [2024-03-21 08:40:15,256] [pool-1-thread-7] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 08:40:15,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:40:15,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:15,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_08-40-15.log] [testng] 08:40:15,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6792290f - End of configuration. [testng] [2024-03-21 08:40:15,475] [pool-1-thread-6] Initializing /data/simon/24_bit_problem.avi: [testng] 08:40:15,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:40:15,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:15,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_08-40-15.log] [testng] 08:40:15,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f61534 - End of configuration. [testng] [2024-03-21 08:40:15,768] [pool-1-thread-5] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 08:40:15,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:40:15,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:15,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_08-40-15.log] [testng] 08:40:15,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565ad560 - End of configuration. [testng] [2024-03-21 08:40:15,985] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 08:40:15,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:40:15,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:15,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_08-40-15.log] [testng] 08:40:15,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a4df874 - End of configuration. [testng] [2024-03-21 08:40:16,277] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 08:40:16,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:40:16,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:16,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_08-40-16.log] [testng] 08:40:16,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b4b39cc - End of configuration. [testng] [2024-03-21 08:40:16,524] [pool-1-thread-2] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 08:40:16,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:40:16,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:40:16,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_08-40-16.log] [testng] 08:40:16,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c48640 - End of configuration. [testng] [2024-03-21 08:40:19,307] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-03-21 08:40:19,787] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi: [testng] [2024-03-21 08:40:20,239] [pool-1-thread-12] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-03-21 08:40:20,719] [pool-1-thread-10] Initializing /data/ascb/TIRF.avi: [testng] [2024-03-21 08:40:21,481] [pool-1-thread-8] Initializing /data/kurt/40x_6um.avi: [testng] [2024-03-21 08:40:21,707] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-03-21 08:40:33,937] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-03-21 08:40:34,120] [pool-1-thread-2] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-03-21 08:40:34,318] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-03-21 08:40:34,603] [pool-1-thread-1] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-03-21 08:40:34,843] [pool-1-thread-6] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-03-21 08:40:35,104] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-03-21 08:40:36,357] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-03-21 08:40:37,323] [pool-1-thread-3] Initializing /data/william/worm.avi: [testng] [2024-03-21 08:40:37,532] [pool-1-thread-9] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-03-21 08:40:37,842] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-03-21 08:40:38,059] [pool-1-thread-1] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-03-21 08:40:38,963] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-03-21 08:40:39,157] [pool-1-thread-10] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-03-21 08:40:39,344] [pool-1-thread-2] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-03-21 08:40:39,516] [pool-1-thread-11] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-03-21 08:40:39,705] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] [2024-03-21 08:40:44,112] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-03-21 08:40:45,127] [pool-1-thread-3] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-03-21 08:40:45,956] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-03-21 08:40:46,220] [pool-1-thread-6] Initializing /data/kurt/40x_6um_2.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 50 seconds Finished: SUCCESS