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Started by upstream project "BIOFORMATS-test-repo" build number 73 originally caused by: Started by upstream project "Trigger" build number 81 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3023238095995257205.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11116_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:53:02,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:53:02,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:53:02,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:53:02,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:53:02,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:53:02,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:53:02,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:53:02,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:53:02,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:53:02,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:53:02,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:53:02,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:53:03,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:53:03,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:53:03,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:53:03,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:53:03,111 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:53:03,111 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:53:03,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:53:03,112 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:53:03,112 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:53:03,113 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:53:03,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 280 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-24 02:53:03,126] [main] java.version = 1.8.0_342 [testng] 02:53:03,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:53:03,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:03,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-24_02-53-03.log] [testng] 02:53:03,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-24 02:53:03,185] [main] testng.directory = /data [testng] [2024-05-24 02:53:03,185] [main] testng.configDirectory = /config [testng] [2024-05-24 02:53:03,198] [main] testng.multiplier = 1.0 [testng] [2024-05-24 02:53:03,198] [main] testng.in-memory = false [testng] [2024-05-24 02:53:03,198] [main] testng.allow-missing = false [testng] [2024-05-24 02:53:03,198] [main] user.language = en [testng] [2024-05-24 02:53:03,198] [main] user.country = ${user.country} [testng] [2024-05-24 02:53:03,198] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-24 02:53:04,183] [main] ---------------------------------------- [testng] [2024-05-24 02:53:04,183] [main] Total files: 17 [testng] [2024-05-24 02:53:04,183] [main] Scan time: 0.985 s (57 ms/file) [testng] [2024-05-24 02:53:04,183] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-24 02:53:05,286] [pool-1-thread-1] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 02:53:05,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:53:05,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-24_02-53-05.log] [testng] 02:53:05,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55ada8cd - End of configuration. [testng] [2024-05-24 02:53:05,312] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 02:53:05,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:53:05,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-24_02-53-05.log] [testng] 02:53:05,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82e879f - End of configuration. [testng] [2024-05-24 02:53:05,324] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 02:53:05,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:53:05,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-24_02-53-05.log] [testng] 02:53:05,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79cf8f32 - End of configuration. [testng] [2024-05-24 02:53:05,340] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 02:53:05,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:53:05,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-24_02-53-05.log] [testng] 02:53:05,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a37bc6 - End of configuration. [testng] [2024-05-24 02:53:05,355] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 02:53:05,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:53:05,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-24_02-53-05.log] [testng] 02:53:05,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fcc724a - End of configuration. [testng] [2024-05-24 02:53:05,394] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 02:53:05,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:53:05,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-24_02-53-05.log] [testng] 02:53:05,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e866581 - End of configuration. [testng] [2024-05-24 02:53:05,407] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 02:53:05,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:53:05,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-24_02-53-05.log] [testng] 02:53:05,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c43f26 - End of configuration. [testng] [2024-05-24 02:53:05,418] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 02:53:05,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:53:05,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-24_02-53-05.log] [testng] 02:53:05,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d07845f - End of configuration. [testng] [2024-05-24 02:53:05,433] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 02:53:05,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:53:05,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-24_02-53-05.log] [testng] 02:53:05,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3522a6ff - End of configuration. [testng] [2024-05-24 02:53:05,452] [pool-1-thread-4] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 02:53:05,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:53:05,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-24_02-53-05.log] [testng] 02:53:05,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ab4ee6 - End of configuration. [testng] [2024-05-24 02:53:05,489] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm: [testng] 02:53:05,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:53:05,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-24_02-53-05.log] [testng] 02:53:05,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d84095c - End of configuration. [testng] [2024-05-24 02:53:05,529] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 02:53:05,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:53:05,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:53:05,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-24_02-53-05.log] [testng] 02:53:05,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@761907fb - End of configuration. [testng] [2024-05-24 02:53:07,147] [pool-1-thread-10] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-05-24 02:53:07,162] [pool-1-thread-12] Initializing /data/samples/24bit 300x200x3.ipm: [testng] [2024-05-24 02:53:07,179] [pool-1-thread-1] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-05-24 02:53:07,211] [pool-1-thread-9] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-05-24 02:53:07,225] [pool-1-thread-8] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS