![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 8 originally caused by: Started by upstream project "Trigger" build number 11 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5682820589007629514.sh + '[' zip = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1140_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:22:02,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:03,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:22:03,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:03,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:03,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:03,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:03,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:03,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:03,004 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:03,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:03,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:03,005 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:03,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:03,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:03,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:03,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:03,301 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:03,302 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:03,302 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:03,302 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:03,302 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:22:03,303 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:22:03,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 299 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-22 00:22:03,314] [main] java.version = 1.8.0_342 [testng] 00:22:03,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:03,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:03,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-22_00-22-03.log] [testng] 00:22:03,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-22 00:22:03,370] [main] testng.directory = /data [testng] [2024-03-22 00:22:03,370] [main] testng.configDirectory = /config [testng] [2024-03-22 00:22:03,382] [main] testng.multiplier = 1.0 [testng] [2024-03-22 00:22:03,383] [main] testng.in-memory = false [testng] [2024-03-22 00:22:03,383] [main] testng.allow-missing = false [testng] [2024-03-22 00:22:03,383] [main] user.language = en [testng] [2024-03-22 00:22:03,383] [main] user.country = ${user.country} [testng] [2024-03-22 00:22:03,383] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-22 00:22:03,820] [main] ---------------------------------------- [testng] [2024-03-22 00:22:03,820] [main] Total files: 22 [testng] [2024-03-22 00:22:03,820] [main] Scan time: 0.437 s (19 ms/file) [testng] [2024-03-22 00:22:03,820] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-22 00:23:09,639] [pool-1-thread-1] Initializing /data/imagej/3D_Chromosome.zip: [testng] 00:23:09,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:23:09,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:09,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-22_00-23-09.log] [testng] 00:23:09,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f86745 - End of configuration. [testng] [2024-03-22 00:23:10,323] [pool-1-thread-12] Initializing /data/imagej/watershed-animation.zip: [testng] 00:23:10,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:23:10,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:10,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-22_00-23-10.log] [testng] 00:23:10,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c75f9ba - End of configuration. [testng] [2024-03-22 00:23:10,705] [pool-1-thread-11] Initializing /data/imagej/scala-media.zip: [testng] 00:23:10,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:23:10,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:10,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-22_00-23-10.log] [testng] 00:23:10,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a131ae7 - End of configuration. [testng] [2024-03-22 00:23:11,122] [pool-1-thread-10] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 00:23:11,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:23:11,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:11,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-22_00-23-11.log] [testng] 00:23:11,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6385929c - End of configuration. [testng] [2024-03-22 00:23:11,802] [pool-1-thread-9] Initializing /data/imagej/mri-stack.zip: [testng] 00:23:11,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:23:11,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:11,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-22_00-23-11.log] [testng] 00:23:11,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a440482 - End of configuration. [testng] [2024-03-22 00:23:12,404] [pool-1-thread-8] Initializing /data/imagej/blood-brain-barrier.zip: [testng] 00:23:12,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:23:12,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:12,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-22_00-23-12.log] [testng] 00:23:12,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560b7bb0 - End of configuration. [testng] [2024-03-22 00:23:18,369] [pool-1-thread-7] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] 00:23:18,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:23:18,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:18,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-22_00-23-18.log] [testng] 00:23:18,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a72b76b - End of configuration. [testng] [2024-03-22 00:23:19,816] [pool-1-thread-6] Initializing /data/imagej/m51.zip: [testng] 00:23:19,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:23:19,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:19,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-22_00-23-19.log] [testng] 00:23:19,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bc35875 - End of configuration. [testng] [2024-03-22 00:23:20,037] [pool-1-thread-5] Initializing /data/imagej/se3.zip: [testng] 00:23:20,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:23:20,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:20,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-22_00-23-20.log] [testng] 00:23:20,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f423351 - End of configuration. [testng] [2024-03-22 00:23:24,367] [pool-1-thread-4] Initializing /data/imagej/hela-cells.zip: [testng] 00:23:24,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:23:24,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:24,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-22_00-23-24.log] [testng] 00:23:24,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b2fe50 - End of configuration. [testng] [2024-03-22 00:23:25,874] [pool-1-thread-3] Initializing /data/imagej/FluorescentCells.zip: [testng] 00:23:25,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:23:25,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:25,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-22_00-23-25.log] [testng] 00:23:25,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9b10d8 - End of configuration. [testng] [2024-03-22 00:23:26,675] [pool-1-thread-2] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 00:23:26,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:23:26,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:26,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-22_00-23-26.log] [testng] 00:23:26,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47561006 - End of configuration. [testng] [2024-03-22 00:23:37,529] [pool-1-thread-6] Initializing /data/samples/sdub.zip: [testng] [2024-03-22 00:23:38,083] [pool-1-thread-11] Initializing /data/imagej/gel-electrophoresis.zip: [testng] [2024-03-22 00:23:40,075] [pool-1-thread-12] Initializing /data/imagej/confocal-stack.zip: [testng] [2024-03-22 00:23:48,119] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [2024-03-22 00:23:50,313] [pool-1-thread-3] Initializing /data/imagej/RatBrain.zip: [testng] [2024-03-22 00:23:51,081] [pool-1-thread-9] Initializing /data/imagej/fat-cells.zip: [testng] [2024-03-22 00:23:55,470] [pool-1-thread-6] Initializing /data/imagej/flybrain.zip: [testng] [2024-03-22 00:24:03,105] [pool-1-thread-1] Initializing /data/imagej/xrays.zip: [testng] [2024-03-22 00:24:09,426] [pool-1-thread-3] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] [2024-03-22 00:24:15,410] [pool-1-thread-1] Initializing /data/imagej/confocal-series.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 56 seconds Finished: SUCCESS