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Started by upstream project "BIOFORMATS-test-repo" build number 75 originally caused by: Started by upstream project "Trigger" build number 83 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1423859608439524468.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11444_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:41:34,393 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:41:34,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:41:34,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:41:34,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:41:34,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:41:34,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:41:34,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:41:34,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:41:34,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:41:34,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:41:34,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:41:34,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:41:34,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:41:34,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:41:34,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:41:34,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:41:34,587 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:41:34,588 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:41:34,588 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:41:34,588 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:41:34,588 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:41:34,589 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:41:34,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-26 02:41:34,598] [main] java.version = 17.0.2 [testng] 02:41:34,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:34,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:34,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-26_02-41-34.log] [testng] 02:41:34,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-26 02:41:34,645] [main] testng.directory = /data [testng] [2024-05-26 02:41:34,646] [main] testng.configDirectory = /config [testng] [2024-05-26 02:41:34,655] [main] testng.multiplier = 1.0 [testng] [2024-05-26 02:41:34,656] [main] testng.in-memory = false [testng] [2024-05-26 02:41:34,656] [main] testng.allow-missing = false [testng] [2024-05-26 02:41:34,656] [main] user.language = en [testng] [2024-05-26 02:41:34,656] [main] user.country = ${user.country} [testng] [2024-05-26 02:41:34,656] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-26 02:41:35,566] [main] ---------------------------------------- [testng] [2024-05-26 02:41:35,566] [main] Total files: 17 [testng] [2024-05-26 02:41:35,566] [main] Scan time: 0.91 s (53 ms/file) [testng] [2024-05-26 02:41:35,566] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-26 02:41:36,572] [pool-1-thread-1] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 02:41:36,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:41:36,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-26_02-41-36.log] [testng] 02:41:36,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@246adb2e - End of configuration. [testng] [2024-05-26 02:41:36,598] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 02:41:36,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:41:36,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-26_02-41-36.log] [testng] 02:41:36,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143761f9 - End of configuration. [testng] [2024-05-26 02:41:36,639] [pool-1-thread-11] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 02:41:36,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:41:36,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-26_02-41-36.log] [testng] 02:41:36,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dff74a6 - End of configuration. [testng] [2024-05-26 02:41:36,672] [pool-1-thread-10] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 02:41:36,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:41:36,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-26_02-41-36.log] [testng] 02:41:36,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63eb9db2 - End of configuration. [testng] [2024-05-26 02:41:36,699] [pool-1-thread-9] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 02:41:36,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:41:36,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-26_02-41-36.log] [testng] 02:41:36,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a27df4 - End of configuration. [testng] [2024-05-26 02:41:36,726] [pool-1-thread-8] Initializing /data/christopher/Color48 Copy.ipm: [testng] 02:41:36,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:41:36,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-26_02-41-36.log] [testng] 02:41:36,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4be8538 - End of configuration. [testng] [2024-05-26 02:41:36,744] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 02:41:36,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:41:36,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-26_02-41-36.log] [testng] 02:41:36,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a52576a - End of configuration. [testng] [2024-05-26 02:41:36,757] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 02:41:36,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:41:36,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-26_02-41-36.log] [testng] 02:41:36,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57749fab - End of configuration. [testng] [2024-05-26 02:41:36,774] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 02:41:36,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:41:36,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-26_02-41-36.log] [testng] 02:41:36,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@702446ac - End of configuration. [testng] [2024-05-26 02:41:36,800] [pool-1-thread-4] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 02:41:36,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:41:36,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-26_02-41-36.log] [testng] 02:41:36,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@217ceeab - End of configuration. [testng] [2024-05-26 02:41:36,809] [pool-1-thread-3] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 02:41:36,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:41:36,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-26_02-41-36.log] [testng] 02:41:36,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cafe60 - End of configuration. [testng] [2024-05-26 02:41:36,828] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 02:41:36,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:41:36,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:36,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-26_02-41-36.log] [testng] 02:41:36,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f735ca9 - End of configuration. [testng] [2024-05-26 02:41:38,394] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [2024-05-26 02:41:38,402] [pool-1-thread-4] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-05-26 02:41:38,425] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-05-26 02:41:38,440] [pool-1-thread-6] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] [2024-05-26 02:41:38,448] [pool-1-thread-12] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS