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Started by upstream project "BIOFORMATS-test-repo" build number 8 originally caused by: Started by upstream project "Trigger" build number 11 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17146989574096717878.sh + '[' fei = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1146_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:26:29,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:26:29,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:26:29,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:29,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:29,136 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:26:29,136 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:26:29,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:26:29,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:29,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:29,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:26:29,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:26:29,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:26:29,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:26:29,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:26:29,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:26:29,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:26:29,412 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:26:29,412 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:26:29,412 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:26:29,413 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:26:29,413 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:26:29,414 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:26:29,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-22 00:26:29,424] [main] java.version = 1.8.0_342 [testng] 00:26:29,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:26:29,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:29,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-22_00-26-29.log] [testng] 00:26:29,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-22 00:26:29,482] [main] testng.directory = /data [testng] [2024-03-22 00:26:29,482] [main] testng.configDirectory = /config [testng] [2024-03-22 00:26:29,494] [main] testng.multiplier = 1.0 [testng] [2024-03-22 00:26:29,495] [main] testng.in-memory = false [testng] [2024-03-22 00:26:29,495] [main] testng.allow-missing = false [testng] [2024-03-22 00:26:29,495] [main] user.language = en [testng] [2024-03-22 00:26:29,495] [main] user.country = ${user.country} [testng] [2024-03-22 00:26:29,495] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-22 00:26:31,705] [main] ---------------------------------------- [testng] [2024-03-22 00:26:31,706] [main] Total files: 21 [testng] [2024-03-22 00:26:31,706] [main] Scan time: 2.21 s (105 ms/file) [testng] [2024-03-22 00:26:31,706] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-22 00:26:37,205] [pool-1-thread-1] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 00:26:37,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:26:37,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:37,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-22_00-26-37.log] [testng] 00:26:37,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f12e069 - End of configuration. [testng] [2024-03-22 00:26:37,442] [pool-1-thread-12] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 00:26:37,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:26:37,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:37,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-22_00-26-37.log] [testng] 00:26:37,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f3a36ee - End of configuration. [testng] [2024-03-22 00:26:37,697] [pool-1-thread-11] Initializing /data/venu/VENU.TIF: [testng] 00:26:37,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:26:37,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:37,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-22_00-26-37.log] [testng] 00:26:37,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593c180 - End of configuration. [testng] [2024-03-22 00:26:37,889] [pool-1-thread-10] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 00:26:37,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:26:37,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:37,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-22_00-26-37.log] [testng] 00:26:37,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e86ac4a - End of configuration. [testng] [2024-03-22 00:26:38,126] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG: [testng] 00:26:38,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:26:38,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-22_00-26-38.log] [testng] 00:26:38,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba1a856 - End of configuration. [testng] [2024-03-22 00:26:38,206] [pool-1-thread-8] Initializing /data/steffen/Batman_008.tif: [testng] 00:26:38,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:26:38,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-22_00-26-38.log] [testng] 00:26:38,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f5c558b - End of configuration. [testng] [2024-03-22 00:26:38,348] [pool-1-thread-7] Initializing /data/venu/VENU_Five.TIF: [testng] 00:26:38,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:26:38,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-22_00-26-38.log] [testng] 00:26:38,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@789e7e26 - End of configuration. [testng] [2024-03-22 00:26:38,513] [pool-1-thread-5] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 00:26:38,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:26:38,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-22_00-26-38.log] [testng] 00:26:38,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590d3ba5 - End of configuration. [testng] [2024-03-22 00:26:38,628] [pool-1-thread-6] Initializing /data/venu/VENU_Four.TIF: [testng] 00:26:38,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:26:38,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-22_00-26-38.log] [testng] 00:26:38,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c24088b - End of configuration. [testng] [2024-03-22 00:26:38,728] [pool-1-thread-4] Initializing /data/venu/VENU_Six.TIF: [testng] 00:26:38,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:26:38,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-22_00-26-38.log] [testng] 00:26:38,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d683b0 - End of configuration. [testng] [2024-03-22 00:26:38,792] [pool-1-thread-3] Initializing /data/venu/VENU_Eight.TIF: [testng] 00:26:38,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:38,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-22_00-26-38.log] [testng] 00:26:38,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5baea892 - End of configuration. [testng] [2024-03-22 00:26:38,880] [pool-1-thread-2] Initializing /data/venu/VENU03.TIF: [testng] 00:26:38,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:38,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-22_00-26-38.log] [testng] 00:26:38,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d13ec87 - End of configuration. [testng] [2024-03-22 00:26:41,269] [pool-1-thread-9] Initializing /data/venu/VENU_Seven.TIF: [testng] [2024-03-22 00:26:41,466] [pool-1-thread-11] Initializing /data/venu/VENU01.TIF: [testng] [2024-03-22 00:26:41,692] [pool-1-thread-4] Initializing /data/venu/VENU01.IMG: [testng] [2024-03-22 00:26:41,773] [pool-1-thread-10] Initializing /data/venu/VENU02.TIF: [testng] [2024-03-22 00:26:42,022] [pool-1-thread-6] Initializing /data/venu/VENU02.IMG: [testng] [2024-03-22 00:26:42,093] [pool-1-thread-8] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS