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Started by upstream project "BIOFORMATS-test-repo" build number 76 originally caused by: Started by upstream project "Trigger" build number 84 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16407703095611318735.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_11542_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:08:18,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:08:18,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:08:18,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:08:18,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:08:18,649 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:08:18,649 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:08:18,649 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:08:18,650 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:08:18,650 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:08:18,651 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:08:18,651 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 487 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-27 02:08:18,682] [main] java.version = 1.8.0_342 [testng] 02:08:18,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:08:18,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:18,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-27_02-08-18.log] [testng] 02:08:18,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-27 02:08:18,741] [main] testng.directory = /data [testng] [2024-05-27 02:08:18,742] [main] testng.configDirectory = /config [testng] [2024-05-27 02:08:18,789] [main] testng.multiplier = 1.0 [testng] [2024-05-27 02:08:18,789] [main] testng.in-memory = false [testng] [2024-05-27 02:08:18,789] [main] testng.allow-missing = false [testng] [2024-05-27 02:08:18,790] [main] user.language = fr [testng] [2024-05-27 02:08:18,790] [main] user.country = FR [testng] [2024-05-27 02:08:18,790] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-27 02:08:30,008] [main] ---------------------------------------- [testng] [2024-05-27 02:08:30,008] [main] Total files: 268 [testng] [2024-05-27 02:08:30,008] [main] Scan time: 11.218 s (41 ms/file) [testng] [2024-05-27 02:08:30,008] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-27 02:08:44,887] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:08:44,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:44,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:44,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-27_02-08-44.log] [testng] 02:08:44,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dd63bbe - End of configuration. [testng] [2024-05-27 02:08:44,940] [pool-1-thread-12] Initializing /data/steve/TIFF/HAFF SEM: [testng] 02:08:44,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:44,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:44,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-27_02-08-44.log] [testng] 02:08:44,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fb37837 - End of configuration. [testng] [2024-05-27 02:08:44,993] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] 02:08:44,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:44,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:44,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-27_02-08-44.log] [testng] 02:08:44,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77479ce1 - End of configuration. [testng] [2024-05-27 02:08:45,032] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] 02:08:45,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:45,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-27_02-08-45.log] [testng] 02:08:45,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad74c39 - End of configuration. [testng] [2024-05-27 02:08:45,054] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 02:08:45,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:45,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-27_02-08-45.log] [testng] 02:08:45,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef8a2e8 - End of configuration. [testng] [2024-05-27 02:08:45,071] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:08:45,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:45,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-27_02-08-45.log] [testng] 02:08:45,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26d6c703 - End of configuration. [testng] [2024-05-27 02:08:45,089] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] 02:08:45,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:45,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-27_02-08-45.log] [testng] 02:08:45,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568ab13b - End of configuration. [testng] [2024-05-27 02:08:45,137] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] 02:08:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-27_02-08-45.log] [testng] 02:08:45,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f5c558b - End of configuration. [testng] [2024-05-27 02:08:45,169] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] 02:08:45,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:45,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-27_02-08-45.log] [testng] 02:08:45,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fc937ef - End of configuration. [testng] [2024-05-27 02:08:45,213] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] 02:08:45,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:45,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-27_02-08-45.log] [testng] 02:08:45,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40283b43 - End of configuration. [testng] [2024-05-27 02:08:45,254] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] 02:08:45,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:45,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-27_02-08-45.log] [testng] 02:08:45,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2524092b - End of configuration. [testng] [2024-05-27 02:08:45,298] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] 02:08:45,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:45,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:45,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-27_02-08-45.log] [testng] 02:08:45,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f4dbc49 - End of configuration. [testng] [2024-05-27 02:08:47,631] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-05-27 02:08:47,647] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-05-27 02:08:47,671] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-05-27 02:08:47,686] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-05-27 02:08:47,701] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-05-27 02:08:47,712] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-05-27 02:08:47,726] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-05-27 02:08:47,745] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-05-27 02:08:47,755] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-05-27 02:08:47,776] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-05-27 02:08:47,793] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-05-27 02:08:47,817] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-05-27 02:08:48,240] [pool-1-thread-8] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-05-27 02:08:48,267] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-05-27 02:08:48,320] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-05-27 02:08:48,362] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-05-27 02:08:48,410] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] [2024-05-27 02:08:48,415] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-05-27 02:08:48,470] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-05-27 02:08:48,476] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-05-27 02:08:48,498] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-05-27 02:08:48,613] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-05-27 02:08:48,676] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-05-27 02:08:48,860] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-05-27 02:08:48,906] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-05-27 02:08:48,921] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-05-27 02:08:48,950] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-05-27 02:08:49,010] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-05-27 02:08:49,089] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-05-27 02:08:49,304] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-05-27 02:08:49,371] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-05-27 02:08:49,402] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-05-27 02:08:49,422] [pool-1-thread-4] Initializing /data/steve/FITS/M104.fits: [testng] [2024-05-27 02:08:49,450] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-05-27 02:08:49,634] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-05-27 02:08:49,693] [pool-1-thread-10] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-05-27 02:08:49,803] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-05-27 02:08:49,832] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-05-27 02:08:49,890] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-05-27 02:08:49,905] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-05-27 02:08:49,929] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-05-27 02:08:50,080] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-05-27 02:08:50,128] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-05-27 02:08:50,149] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-05-27 02:08:50,176] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-05-27 02:08:50,361] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-05-27 02:08:50,507] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-05-27 02:08:50,723] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-05-27 02:08:50,776] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-05-27 02:08:50,810] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-05-27 02:08:50,914] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-05-27 02:08:50,930] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-05-27 02:08:50,997] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-05-27 02:08:51,145] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-05-27 02:08:51,335] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-05-27 02:08:51,362] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-05-27 02:08:51,385] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-05-27 02:08:51,396] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-05-27 02:08:51,424] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-05-27 02:08:51,687] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-05-27 02:08:51,751] [pool-1-thread-7] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-05-27 02:08:51,822] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-05-27 02:08:51,910] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-05-27 02:08:52,057] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-05-27 02:08:52,066] [pool-1-thread-8] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-05-27 02:08:52,094] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-05-27 02:08:52,103] [pool-1-thread-9] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-05-27 02:08:52,133] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-05-27 02:08:52,227] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-05-27 02:08:52,248] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-05-27 02:08:52,335] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-05-27 02:08:52,374] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-05-27 02:08:52,450] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-05-27 02:08:52,538] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-05-27 02:08:52,563] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-05-27 02:08:52,606] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-05-27 02:08:52,634] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-05-27 02:08:52,695] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-05-27 02:08:52,713] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-05-27 02:08:52,747] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-05-27 02:08:52,795] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-05-27 02:08:52,829] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-05-27 02:08:52,977] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-05-27 02:08:53,198] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-05-27 02:08:53,226] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-05-27 02:08:53,305] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-05-27 02:08:53,374] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-05-27 02:08:53,505] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-05-27 02:08:53,573] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-05-27 02:08:53,665] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-05-27 02:08:53,704] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-05-27 02:08:53,820] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-05-27 02:08:53,907] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-05-27 02:08:53,948] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-05-27 02:08:54,095] [pool-1-thread-9] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-05-27 02:08:54,148] [pool-1-thread-7] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-05-27 02:08:54,218] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-05-27 02:08:54,251] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-05-27 02:08:54,325] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-05-27 02:08:54,550] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-05-27 02:08:54,607] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-05-27 02:08:54,685] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-05-27 02:08:54,769] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-05-27 02:08:54,975] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-05-27 02:08:54,995] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-05-27 02:08:55,084] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-05-27 02:08:55,164] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-05-27 02:08:55,191] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-05-27 02:08:55,289] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-05-27 02:08:55,368] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-05-27 02:08:55,460] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-05-27 02:08:55,505] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-05-27 02:08:55,535] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-05-27 02:08:55,636] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-05-27 02:08:55,668] [pool-1-thread-6] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-05-27 02:08:55,714] [pool-1-thread-2] Initializing /data/steve/FITS/M13.fits: [testng] [2024-05-27 02:08:55,724] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-05-27 02:08:55,828] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-05-27 02:08:55,949] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-05-27 02:08:56,019] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-05-27 02:08:56,094] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-05-27 02:08:56,106] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-05-27 02:08:56,126] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-05-27 02:08:56,136] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-05-27 02:08:56,174] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-05-27 02:08:56,228] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-05-27 02:08:56,373] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-05-27 02:08:56,468] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-05-27 02:08:56,511] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-05-27 02:08:56,606] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-05-27 02:08:56,656] [pool-1-thread-10] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-05-27 02:08:56,704] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-05-27 02:08:56,754] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-05-27 02:08:56,769] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-05-27 02:08:56,819] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-05-27 02:08:56,896] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-05-27 02:08:56,984] [pool-1-thread-1] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-05-27 02:08:57,094] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-05-27 02:08:57,138] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-05-27 02:08:57,169] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-05-27 02:08:57,186] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-05-27 02:08:57,225] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-05-27 02:08:57,249] [pool-1-thread-3] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-05-27 02:08:57,368] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-05-27 02:08:57,410] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-05-27 02:08:57,482] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-05-27 02:08:57,565] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-05-27 02:08:57,611] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 44 seconds Finished: SUCCESS