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Started by upstream project "BIOFORMATS-test-repo" build number 77 originally caused by: Started by upstream project "Trigger" build number 85 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11509581709422478019.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11618_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:19:33,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:19:33,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:19:33,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:19:33,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:19:33,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:19:33,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:19:33,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:19:33,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:19:33,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:19:33,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:19:33,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:19:33,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:19:33,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:19:33,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:19:33,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:19:33,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:19:33,978 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:19:33,978 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:19:33,978 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:19:33,978 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:19:33,978 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:19:33,979 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:19:33,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-28 01:19:33,989] [main] java.version = 11.0.16 [testng] 01:19:33,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:19:33,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:34,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-28_01-19-34.log] [testng] 01:19:34,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-28 01:19:34,040] [main] testng.directory = /data [testng] [2024-05-28 01:19:34,040] [main] testng.configDirectory = /config [testng] [2024-05-28 01:19:34,050] [main] testng.multiplier = 1.0 [testng] [2024-05-28 01:19:34,052] [main] testng.in-memory = false [testng] [2024-05-28 01:19:34,052] [main] testng.allow-missing = false [testng] [2024-05-28 01:19:34,052] [main] user.language = en [testng] [2024-05-28 01:19:34,052] [main] user.country = ${user.country} [testng] [2024-05-28 01:19:34,052] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-28 01:19:34,533] [main] ---------------------------------------- [testng] [2024-05-28 01:19:34,533] [main] Total files: 36 [testng] [2024-05-28 01:19:34,533] [main] Scan time: 0.481 s (13 ms/file) [testng] [2024-05-28 01:19:34,533] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-28 01:19:36,703] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:19:36,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:19:36,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-28_01-19-36.log] [testng] 01:19:36,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78f4fa6f - End of configuration. [testng] [2024-05-28 01:19:36,760] [pool-1-thread-12] Initializing /data/generated/mri-stack8.pcx: [testng] 01:19:36,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:19:36,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-28_01-19-36.log] [testng] 01:19:36,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171768f5 - End of configuration. [testng] [2024-05-28 01:19:36,768] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx: [testng] 01:19:36,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:19:36,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-28_01-19-36.log] [testng] 01:19:36,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efbf54a - End of configuration. [testng] [2024-05-28 01:19:36,775] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 01:19:36,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:19:36,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-28_01-19-36.log] [testng] 01:19:36,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d712584 - End of configuration. [testng] [2024-05-28 01:19:36,801] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:19:36,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:19:36,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-28_01-19-36.log] [testng] 01:19:36,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db58716 - End of configuration. [testng] [2024-05-28 01:19:36,814] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:19:36,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:19:36,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-28_01-19-36.log] [testng] 01:19:36,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687e807b - End of configuration. [testng] [2024-05-28 01:19:36,827] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] 01:19:36,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:19:36,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-28_01-19-36.log] [testng] 01:19:36,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration. [testng] [2024-05-28 01:19:36,834] [pool-1-thread-6] Initializing /data/generated/mri-stack7.pcx: [testng] 01:19:36,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:19:36,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-28_01-19-36.log] [testng] 01:19:36,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a5ceb83 - End of configuration. [testng] [2024-05-28 01:19:36,841] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] 01:19:36,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:19:36,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-28_01-19-36.log] [testng] 01:19:36,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753d03ae - End of configuration. [testng] [2024-05-28 01:19:36,846] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 01:19:36,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:19:36,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-28_01-19-36.log] [testng] 01:19:36,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f992d8c - End of configuration. [testng] [2024-05-28 01:19:36,855] [pool-1-thread-3] Initializing /data/generated/mri-stack21.pcx: [testng] 01:19:36,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:19:36,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-28_01-19-36.log] [testng] 01:19:36,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c510a82 - End of configuration. [testng] [2024-05-28 01:19:36,862] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx: [testng] 01:19:36,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:19:36,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:36,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-28_01-19-36.log] [testng] 01:19:36,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73acafcc - End of configuration. [testng] [2024-05-28 01:19:39,185] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-05-28 01:19:39,189] [pool-1-thread-9] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-05-28 01:19:39,192] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-05-28 01:19:39,196] [pool-1-thread-5] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-05-28 01:19:39,200] [pool-1-thread-6] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-05-28 01:19:39,204] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-05-28 01:19:39,207] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-05-28 01:19:39,211] [pool-1-thread-2] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-05-28 01:19:39,214] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-05-28 01:19:39,218] [pool-1-thread-8] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-05-28 01:19:39,222] [pool-1-thread-4] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-05-28 01:19:39,226] [pool-1-thread-1] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-05-28 01:19:39,509] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-05-28 01:19:39,545] [pool-1-thread-10] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-05-28 01:19:39,549] [pool-1-thread-5] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-05-28 01:19:39,647] [pool-1-thread-9] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-05-28 01:19:39,652] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-05-28 01:19:39,655] [pool-1-thread-1] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-05-28 01:19:39,661] [pool-1-thread-6] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-05-28 01:19:39,664] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-05-28 01:19:39,670] [pool-1-thread-2] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-05-28 01:19:39,675] [pool-1-thread-12] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-05-28 01:19:39,679] [pool-1-thread-4] Initializing /data/generated/mri-stack6.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS