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Started by upstream project "BIOFORMATS-test-repo" build number 77 originally caused by: Started by upstream project "Trigger" build number 85 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins6670176632782118045.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11655_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:26:00,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:26:00,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:26:00,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:00,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:00,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:26:00,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:26:00,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:26:00,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:00,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:00,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:26:00,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:26:00,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:26:00,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:00,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:00,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:00,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:00,516 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:00,516 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:00,516 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:00,516 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:00,516 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:26:00,517 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:26:00,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-28 01:26:00,527] [main] java.version = 11.0.16 [testng] 01:26:00,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:00,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:00,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-28_01-26-00.log] [testng] 01:26:00,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-28 01:26:00,580] [main] testng.directory = /data [testng] [2024-05-28 01:26:00,581] [main] testng.configDirectory = /config [testng] [2024-05-28 01:26:00,592] [main] testng.multiplier = 1.0 [testng] [2024-05-28 01:26:00,594] [main] testng.in-memory = false [testng] [2024-05-28 01:26:00,594] [main] testng.allow-missing = false [testng] [2024-05-28 01:26:00,594] [main] user.language = en [testng] [2024-05-28 01:26:00,594] [main] user.country = ${user.country} [testng] [2024-05-28 01:26:00,594] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-28 01:26:01,012] [main] ---------------------------------------- [testng] [2024-05-28 01:26:01,012] [main] Total files: 21 [testng] [2024-05-28 01:26:01,012] [main] Scan time: 0.418 s (19 ms/file) [testng] [2024-05-28 01:26:01,012] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-28 01:26:02,240] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA: [testng] 01:26:02,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:02,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-28_01-26-02.log] [testng] 01:26:02,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bcaa199 - End of configuration. [testng] [2024-05-28 01:26:02,266] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:26:02,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:02,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-28_01-26-02.log] [testng] 01:26:02,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc0e59b - End of configuration. [testng] [2024-05-28 01:26:02,322] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: [testng] 01:26:02,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:02,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-28_01-26-02.log] [testng] 01:26:02,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d1ed30 - End of configuration. [testng] [2024-05-28 01:26:02,339] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 01:26:02,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:02,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-28_01-26-02.log] [testng] 01:26:02,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5465df6b - End of configuration. [testng] [2024-05-28 01:26:02,353] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:26:02,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:02,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-28_01-26-02.log] [testng] 01:26:02,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e80da2c - End of configuration. [testng] [2024-05-28 01:26:02,367] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:26:02,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:02,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-28_01-26-02.log] [testng] 01:26:02,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7afd889b - End of configuration. [testng] [2024-05-28 01:26:02,382] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA: [testng] 01:26:02,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:02,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-28_01-26-02.log] [testng] 01:26:02,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72710555 - End of configuration. [testng] [2024-05-28 01:26:02,393] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA: [testng] 01:26:02,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:02,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-28_01-26-02.log] [testng] 01:26:02,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2be2adad - End of configuration. [testng] [2024-05-28 01:26:02,404] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] 01:26:02,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:02,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-28_01-26-02.log] [testng] 01:26:02,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26b47f61 - End of configuration. [testng] [2024-05-28 01:26:02,427] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:26:02,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:02,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-28_01-26-02.log] [testng] 01:26:02,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ddefc0f - End of configuration. [testng] [2024-05-28 01:26:02,439] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] 01:26:02,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:02,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-28_01-26-02.log] [testng] 01:26:02,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6fe0a5 - End of configuration. [testng] [2024-05-28 01:26:02,450] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] 01:26:02,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:02,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:02,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-28_01-26-02.log] [testng] 01:26:02,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22bea5eb - End of configuration. [testng] [2024-05-28 01:26:03,948] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] [2024-05-28 01:26:03,959] [pool-1-thread-6] Initializing /data/samples/XING_T24.TGA: [testng] [2024-05-28 01:26:03,971] [pool-1-thread-9] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-05-28 01:26:03,984] [pool-1-thread-8] Initializing /data/samples/UCM8.TGA: [testng] [2024-05-28 01:26:03,994] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA: [testng] [2024-05-28 01:26:04,004] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] [2024-05-28 01:26:04,015] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] [2024-05-28 01:26:04,023] [pool-1-thread-10] Initializing /data/samples/CCM8.TGA: [testng] [2024-05-28 01:26:04,211] [pool-1-thread-1] Initializing /data/samples/UBW8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS