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Started by upstream project "BIOFORMATS-test-repo" build number 78 originally caused by: Started by upstream project "Trigger" build number 86 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins2506327417360250040.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11866_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:56:38,724 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:56:38,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:56:38,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:38,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:38,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:56:38,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:56:38,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:56:38,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:38,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:38,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:56:38,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:56:38,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:56:38,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:56:38,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:56:38,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:56:38,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:56:38,919 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:56:38,920 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:56:38,920 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:56:38,920 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:56:38,920 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:56:38,921 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:56:38,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-29 01:56:38,930] [main] java.version = 17.0.2 [testng] 01:56:38,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:56:38,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:38,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-29_01-56-38.log] [testng] 01:56:38,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-29 01:56:38,977] [main] testng.directory = /data [testng] [2024-05-29 01:56:38,978] [main] testng.configDirectory = /config [testng] [2024-05-29 01:56:38,986] [main] testng.multiplier = 1.0 [testng] [2024-05-29 01:56:38,987] [main] testng.in-memory = false [testng] [2024-05-29 01:56:38,987] [main] testng.allow-missing = false [testng] [2024-05-29 01:56:38,987] [main] user.language = en [testng] [2024-05-29 01:56:38,987] [main] user.country = ${user.country} [testng] [2024-05-29 01:56:38,987] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-29 02:03:46,678] [main] ---------------------------------------- [testng] [2024-05-29 02:03:46,679] [main] Total files: 7329 [testng] [2024-05-29 02:03:46,679] [main] Scan time: 427.691 s (58 ms/file) [testng] [2024-05-29 02:03:46,679] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-29 02:07:12,441] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:07:12,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:12,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:12,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-29_02-07-12.log] [testng] 02:07:12,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b03c026 - End of configuration. [testng] [2024-05-29 02:07:12,519] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 02:07:12,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:12,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:12,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-29_02-07-12.log] [testng] 02:07:12,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3db611 - End of configuration. [testng] [2024-05-29 02:07:12,818] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 02:07:12,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:12,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:12,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-29_02-07-12.log] [testng] 02:07:12,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132d8d0b - End of configuration. [testng] [2024-05-29 02:07:12,865] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-29 02:07:12,867] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 02:07:12,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:12,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:12,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-29_02-07-12.log] [testng] 02:07:12,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33fe01bc - End of configuration. [testng] [2024-05-29 02:07:12,929] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:07:12,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:12,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:12,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-29_02-07-12.log] [testng] 02:07:12,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1ead8 - End of configuration. [testng] [2024-05-29 02:07:13,006] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 02:07:13,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:13,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-29_02-07-13.log] [testng] 02:07:13,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b9128c - End of configuration. [testng] [2024-05-29 02:07:13,079] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 02:07:13,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:13,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-29_02-07-13.log] [testng] 02:07:13,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c855115 - End of configuration. [testng] [2024-05-29 02:07:13,142] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-29 02:07:13,145] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 02:07:13,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:13,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-29_02-07-13.log] [testng] 02:07:13,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4a06d0 - End of configuration. [testng] [2024-05-29 02:07:13,228] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:07:13,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:13,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-29_02-07-13.log] [testng] 02:07:13,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f7b1d3 - End of configuration. [testng] [2024-05-29 02:07:13,291] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 02:07:13,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:13,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-29_02-07-13.log] [testng] 02:07:13,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2de983 - End of configuration. [testng] [2024-05-29 02:07:13,328] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 02:07:13,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:13,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:13,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-29_02-07-13.log] [testng] 02:07:13,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@706f4026 - End of configuration. [testng] [2024-05-29 02:07:14,054] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 02:07:14,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:14,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-29_02-07-14.log] [testng] 02:07:14,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fc937ef - End of configuration. [testng] [2024-05-29 02:07:15,618] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-29 02:07:16,026] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-05-29 02:07:16,090] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-29 02:07:16,143] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-05-29 02:07:16,212] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-29 02:07:16,502] [pool-1-thread-6] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-05-29 02:07:16,710] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-29 02:07:16,832] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-29 02:07:17,137] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-05-29 02:07:17,402] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-05-29 02:07:17,469] [pool-1-thread-8] Used files list does not include base file [testng] [2024-05-29 02:07:17,485] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-29 02:07:17,755] [pool-1-thread-11] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-05-29 02:07:17,873] [pool-1-thread-7] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-05-29 02:07:18,052] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-29 02:07:18,987] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-05-29 02:07:19,570] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-05-29 02:07:20,635] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-05-29 02:07:21,240] [pool-1-thread-10] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-29 02:07:21,298] [pool-1-thread-4] Initializing /data/qa-16887/m-01.tif: [testng] [2024-05-29 02:07:21,688] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-05-29 02:07:21,791] [pool-1-thread-7] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-05-29 02:07:21,912] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-29 02:07:21,934] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-29 02:07:21,969] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-29 02:07:22,514] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-05-29 02:07:23,497] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2024-05-29 02:07:24,436] [pool-1-thread-10] Initializing /data/samples/zserEight.stk: [testng] [2024-05-29 02:07:24,665] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-05-29 02:07:25,310] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-29 02:07:25,479] [pool-1-thread-1] Initializing /data/samples/zserSixteen.stk: [testng] [2024-05-29 02:07:25,626] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-29 02:07:25,697] [pool-1-thread-11] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-29 02:07:25,912] [pool-1-thread-1] Initializing /data/ascb/golgi marker.tif: [testng] [2024-05-29 02:07:26,020] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-05-29 02:07:26,627] [pool-1-thread-10] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-29 02:07:26,877] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-29 02:07:26,962] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-29 02:07:27,174] [pool-1-thread-12] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-29 02:07:28,566] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-05-29 02:07:28,651] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-05-29 02:07:29,082] [pool-1-thread-9] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-05-29 02:07:29,411] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-29 02:07:30,418] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-05-29 02:07:30,469] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-29 02:07:30,470] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-05-29 02:07:30,782] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-05-29 02:07:30,959] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-29 02:07:30,987] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-29 02:07:31,297] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-05-29 02:07:31,391] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-05-29 02:07:31,548] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-29 02:07:31,751] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-05-29 02:07:31,975] [pool-1-thread-5] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-05-29 02:07:38,507] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-29 02:07:38,763] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-05-29 02:07:38,826] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-29 02:07:38,986] [pool-1-thread-6] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-05-29 02:07:39,044] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-29 02:07:39,707] [pool-1-thread-6] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-05-29 02:07:40,443] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-05-29 02:07:40,517] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-05-29 02:07:40,768] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-29 02:07:42,100] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-29 02:07:42,184] [pool-1-thread-11] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-29 02:07:42,640] [pool-1-thread-4] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-29 02:07:42,977] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-05-29 02:07:43,271] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-05-29 02:07:43,337] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-29 02:07:43,633] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full 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[testng] [2024-05-29 02:07:52,835] [pool-1-thread-12] Initializing /data/samples/diatoms3d.stk: [testng] [2024-05-29 02:07:52,953] [pool-1-thread-7] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-05-29 02:07:53,147] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-29 02:07:53,238] [pool-1-thread-11] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-29 02:07:53,476] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-29 02:07:53,657] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-05-29 02:07:54,032] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-29 02:07:54,188] [pool-1-thread-4] Initializing /data/josh/2101to600f.stk: [testng] [2024-05-29 02:07:57,160] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 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02:07:58,936] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-05-29 02:07:59,393] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-29 02:07:59,447] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk: [testng] [2024-05-29 02:07:59,648] [pool-1-thread-11] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-05-29 02:07:59,740] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-05-29 02:07:59,898] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:01,133] [pool-1-thread-9] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-05-29 02:08:01,191] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:01,266] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2024-05-29 02:08:01,540] [pool-1-thread-6] Initializing 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Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:18,644] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-29 02:08:19,073] [pool-1-thread-1] Initializing /data/dave/Z Series.stk: [testng] [2024-05-29 02:08:19,635] [pool-1-thread-3] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-05-29 02:08:19,693] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-29 02:08:19,770] [pool-1-thread-9] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-05-29 02:08:19,929] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:20,434] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-05-29 02:08:20,787] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-29 02:08:20,929] [pool-1-thread-1] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-05-29 02:08:21,925] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-05-29 02:08:22,007] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-29 02:08:22,021] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-05-29 02:08:22,077] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-05-29 02:08:22,174] [pool-1-thread-2] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-05-29 02:08:22,619] [pool-1-thread-4] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-05-29 02:08:23,275] [pool-1-thread-9] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-29 02:08:23,622] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-29 02:08:24,053] [pool-1-thread-6] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-29 02:08:24,576] [pool-1-thread-4] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-05-29 02:08:24,861] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-29 02:08:24,924] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-05-29 02:08:26,501] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-29 02:08:26,999] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-29 02:08:27,458] [pool-1-thread-7] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-29 02:08:27,869] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-29 02:08:28,113] [pool-1-thread-2] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-05-29 02:08:28,582] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-05-29 02:08:29,126] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-05-29 02:08:29,358] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2024-05-29 02:08:29,759] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-29 02:08:30,260] [pool-1-thread-4] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-05-29 02:08:30,341] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-05-29 02:08:30,954] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-29 02:08:31,020] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-29 02:08:31,082] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-05-29 02:08:31,631] [pool-1-thread-10] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-05-29 02:08:31,962] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-29 02:08:32,029] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:32,204] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-05-29 02:08:32,778] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-05-29 02:08:32,861] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:33,105] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-05-29 02:08:33,301] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-29 02:08:33,456] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-29 02:08:34,844] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-29 02:08:34,875] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-29 02:08:34,886] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:35,202] [pool-1-thread-1] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-05-29 02:08:35,324] [pool-1-thread-2] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-05-29 02:08:35,405] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-29 02:08:35,550] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-29 02:08:35,631] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-29 02:08:35,948] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-29 02:08:36,054] [pool-1-thread-1] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-05-29 02:08:36,317] [pool-1-thread-12] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-29 02:08:38,144] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-05-29 02:08:38,208] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-05-29 02:08:38,484] [pool-1-thread-4] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-29 02:08:38,841] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-05-29 02:08:39,682] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-29 02:08:39,791] [pool-1-thread-11] Initializing /data/jerome/deconv.STK: [testng] [2024-05-29 02:08:40,236] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-05-29 02:08:43,105] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-05-29 02:08:43,214] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-05-29 02:08:46,341] [pool-1-thread-2] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 7 seconds Finished: SUCCESS