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Started by upstream project "BIOFORMATS-test-repo" build number 79 originally caused by: Started by upstream project "Trigger" build number 87 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins96728873972743537.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_11957_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:56,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:56,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:21:56,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:57,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:57,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:57,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:57,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:57,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:57,002 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:57,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:57,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:57,003 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:57,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:57,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:57,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:57,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:57,195 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:57,195 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:57,195 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:57,195 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:57,196 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:21:57,196 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:21:57,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-30 01:21:57,205] [main] java.version = 21 [testng] 01:21:57,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:57,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:57,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-30_01-21-57.log] [testng] 01:21:57,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-30 01:21:57,254] [main] testng.directory = /data [testng] [2024-05-30 01:21:57,254] [main] testng.configDirectory = /config [testng] [2024-05-30 01:21:57,263] [main] testng.multiplier = 1.0 [testng] [2024-05-30 01:21:57,264] [main] testng.in-memory = false [testng] [2024-05-30 01:21:57,264] [main] testng.allow-missing = false [testng] [2024-05-30 01:21:57,264] [main] user.language = en [testng] [2024-05-30 01:21:57,264] [main] user.country = ${user.country} [testng] [2024-05-30 01:21:57,264] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-30 01:22:05,999] [main] ---------------------------------------- [testng] [2024-05-30 01:22:06,000] [main] Total files: 4424 [testng] [2024-05-30 01:22:06,000] [main] Scan time: 8.735 s (1 ms/file) [testng] [2024-05-30 01:22:06,001] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-30 01:23:55,089] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 01:23:55,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:55,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-30_01-23-55.log] [testng] 01:23:55,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c69620d - End of configuration. [testng] [2024-05-30 01:23:55,123] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] 01:23:55,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:55,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-30_01-23-55.log] [testng] 01:23:55,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e763b18 - End of configuration. [testng] [2024-05-30 01:23:55,154] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] 01:23:55,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:55,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-30_01-23-55.log] [testng] 01:23:55,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d2316cd - End of configuration. [testng] [2024-05-30 01:23:55,183] [pool-1-thread-10] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] 01:23:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-30_01-23-55.log] [testng] 01:23:55,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49c3dccb - End of configuration. [testng] [2024-05-30 01:23:55,248] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] 01:23:55,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:55,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-30_01-23-55.log] [testng] 01:23:55,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@488be3a7 - End of configuration. [testng] [2024-05-30 01:23:55,276] [pool-1-thread-8] Initializing /data/misc/mri.eps: [testng] 01:23:55,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:55,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-30_01-23-55.log] [testng] 01:23:55,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2106ca5f - End of configuration. [testng] [2024-05-30 01:23:55,298] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] 01:23:55,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:55,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-30_01-23-55.log] [testng] 01:23:55,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8d60c2 - End of configuration. [testng] [2024-05-30 01:23:55,329] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] 01:23:55,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:55,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-30_01-23-55.log] [testng] 01:23:55,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fbc1ecc - End of configuration. [testng] [2024-05-30 01:23:55,369] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] 01:23:55,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:55,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-30_01-23-55.log] [testng] 01:23:55,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@103a2b4d - End of configuration. [testng] [2024-05-30 01:23:55,397] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] 01:23:55,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:55,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-30_01-23-55.log] [testng] 01:23:55,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@664763a0 - End of configuration. [testng] [2024-05-30 01:23:55,426] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z036.tif: [testng] 01:23:55,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:55,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-30_01-23-55.log] [testng] 01:23:55,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@293377ae - End of configuration. [testng] [2024-05-30 01:23:55,453] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 01:23:55,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:55,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:55,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-30_01-23-55.log] [testng] 01:23:55,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3414e056 - End of configuration. [testng] [2024-05-30 01:23:57,472] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-05-30 01:23:57,519] [pool-1-thread-6] Initializing /data/curtis/map/jumps-over: [testng] [2024-05-30 01:23:57,541] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-05-30 01:23:57,562] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-05-30 01:23:57,584] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-05-30 01:23:57,608] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-05-30 01:23:57,714] [pool-1-thread-11] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-05-30 01:23:57,741] [pool-1-thread-12] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-05-30 01:23:57,781] [pool-1-thread-9] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-05-30 01:23:59,977] [pool-1-thread-4] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-05-30 01:24:00,065] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0253.TIF: [testng] [2024-05-30 01:24:00,869] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-05-30 01:24:00,892] [pool-1-thread-12] Initializing /data/damian/06m.tiff: [testng] [2024-05-30 01:24:00,937] [pool-1-thread-3] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-05-30 01:24:01,250] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-05-30 01:24:01,298] [pool-1-thread-11] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-05-30 01:24:01,333] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-05-30 01:24:01,580] [pool-1-thread-8] Initializing /data/damian/21m.tiff: [testng] [2024-05-30 01:24:01,619] [pool-1-thread-2] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-05-30 01:24:01,676] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-05-30 01:24:01,767] [pool-1-thread-6] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-05-30 01:24:01,962] [pool-1-thread-12] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-05-30 01:24:02,503] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-05-30 01:24:02,568] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-05-30 01:24:02,626] [pool-1-thread-5] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-05-30 01:24:02,869] [pool-1-thread-8] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-05-30 01:24:03,049] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-05-30 01:24:03,146] [pool-1-thread-6] Initializing /data/damian/33m.tiff: [testng] [2024-05-30 01:24:03,664] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-05-30 01:24:03,878] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-05-30 01:24:03,917] [pool-1-thread-11] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-05-30 01:24:03,958] [pool-1-thread-1] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-05-30 01:24:04,221] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-05-30 01:24:04,321] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-05-30 01:24:04,357] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-05-30 01:24:04,468] [pool-1-thread-8] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-05-30 01:24:04,660] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-05-30 01:24:04,780] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-05-30 01:24:05,008] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] [2024-05-30 01:24:05,114] [pool-1-thread-6] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-05-30 01:24:05,290] [pool-1-thread-7] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-05-30 01:24:05,431] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-05-30 01:24:05,476] [pool-1-thread-1] Initializing /data/julien/baldindq-OVA.TIF: [testng] [2024-05-30 01:24:05,723] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z025.tif: [testng] [2024-05-30 01:24:05,943] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0227.TIF: [testng] [2024-05-30 01:24:06,060] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-05-30 01:24:06,169] [pool-1-thread-6] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-05-30 01:24:06,421] 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[testng] [2024-05-30 01:24:27,508] [pool-1-thread-9] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-05-30 01:24:27,621] [pool-1-thread-5] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-05-30 01:24:27,782] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-05-30 01:24:27,962] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-05-30 01:24:28,358] [pool-1-thread-10] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-05-30 01:24:28,418] [pool-1-thread-9] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-05-30 01:24:28,445] [pool-1-thread-5] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-05-30 01:24:28,473] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-05-30 01:24:28,806] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z013.tif: [testng] [2024-05-30 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01:25:55,822] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2024-05-30 01:25:56,148] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-05-30 01:25:56,230] [pool-1-thread-4] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-05-30 01:25:58,592] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-05-30 01:25:58,669] [pool-1-thread-10] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-05-30 01:25:58,730] [pool-1-thread-2] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-05-30 01:25:59,131] [pool-1-thread-7] Initializing /data/michael/MFISH.tiff: [testng] [2024-05-30 01:25:59,324] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-05-30 01:25:59,477] [pool-1-thread-12] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-05-30 01:25:59,522] [pool-1-thread-11] 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01:26:01,813] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-05-30 01:26:01,917] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-05-30 01:26:02,031] [pool-1-thread-11] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-05-30 01:26:02,325] [pool-1-thread-8] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-05-30 01:26:02,387] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-05-30 01:26:02,486] [pool-1-thread-10] Initializing /data/tamjid/Image_843.tif: [testng] [2024-05-30 01:26:02,685] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-05-30 01:26:02,850] [pool-1-thread-8] Initializing /data/curtis/images24.tiff: [testng] [2024-05-30 01:26:03,051] [pool-1-thread-2] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-05-30 01:26:03,262] [pool-1-thread-8] Initializing 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01:26:06,347] [pool-1-thread-6] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-05-30 01:26:07,025] [pool-1-thread-6] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-05-30 01:26:07,260] [pool-1-thread-12] Initializing /data/curtis/test2.tiff: [testng] [2024-05-30 01:26:07,643] [pool-1-thread-12] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-05-30 01:26:07,703] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-05-30 01:26:07,904] [pool-1-thread-6] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-05-30 01:26:08,297] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-05-30 01:26:08,440] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-05-30 01:26:08,673] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-05-30 01:26:08,717] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-05-30 01:26:09,100] [pool-1-thread-12] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-05-30 01:26:09,171] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-05-30 01:26:09,217] [pool-1-thread-2] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-05-30 01:26:09,358] [pool-1-thread-1] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-05-30 01:26:09,407] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-05-30 01:26:09,599] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-05-30 01:26:09,700] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-05-30 01:26:09,732] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-05-30 01:26:09,974] [pool-1-thread-1] Initializing /data/martin/head.tif: [testng] [2024-05-30 01:26:10,100] [pool-1-thread-9] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-05-30 01:26:10,315] [pool-1-thread-2] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-05-30 01:26:10,508] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] [2024-05-30 01:26:10,563] [pool-1-thread-1] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-05-30 01:26:10,711] [pool-1-thread-11] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-05-30 01:26:10,875] [pool-1-thread-3] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-05-30 01:26:10,916] [pool-1-thread-6] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-05-30 01:26:11,075] [pool-1-thread-7] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-05-30 01:26:11,105] [pool-1-thread-2] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-05-30 01:26:13,108] [pool-1-thread-1] Initializing 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01:26:14,702] [pool-1-thread-3] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-05-30 01:26:15,019] [pool-1-thread-1] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] [2024-05-30 01:26:15,074] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-05-30 01:26:15,096] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-05-30 01:26:15,149] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-05-30 01:26:15,382] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-05-30 01:26:15,419] [pool-1-thread-8] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-05-30 01:26:15,446] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-05-30 01:26:15,466] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-05-30 01:26:15,642] [pool-1-thread-1] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-05-30 01:26:15,736] [pool-1-thread-10] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-05-30 01:26:15,808] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-05-30 01:26:15,845] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] [2024-05-30 01:26:15,969] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-05-30 01:26:16,020] [pool-1-thread-8] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-05-30 01:26:16,898] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-05-30 01:26:16,965] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-05-30 01:26:17,030] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-05-30 01:26:17,058] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-05-30 01:26:17,081] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-05-30 01:26:17,120] [pool-1-thread-6] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-05-30 01:26:17,481] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-05-30 01:26:17,542] [pool-1-thread-10] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-05-30 01:26:17,570] [pool-1-thread-11] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-05-30 01:26:17,683] [pool-1-thread-9] Initializing /data/big-images/4kx4k.tif: [testng] [2024-05-30 01:26:17,874] [pool-1-thread-6] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-05-30 01:26:17,948] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-05-30 01:26:18,050] [pool-1-thread-7] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-05-30 01:26:18,118] [pool-1-thread-11] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-05-30 01:26:18,238] [pool-1-thread-10] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-05-30 01:26:18,404] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-05-30 01:26:18,567] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-05-30 01:26:18,802] [pool-1-thread-10] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-05-30 01:26:18,865] [pool-1-thread-7] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-05-30 01:26:19,182] [pool-1-thread-3] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-05-30 01:26:19,547] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-05-30 01:26:19,589] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-05-30 01:26:19,710] [pool-1-thread-10] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-05-30 01:26:19,814] [pool-1-thread-11] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-05-30 01:26:19,956] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-05-30 01:26:20,201] [pool-1-thread-3] Initializing /data/misc/mri-old.mov: [testng] [2024-05-30 01:26:20,315] [pool-1-thread-10] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-05-30 01:26:20,461] [pool-1-thread-3] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-05-30 01:26:20,496] [pool-1-thread-1] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-05-30 01:26:20,890] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-05-30 01:26:20,914] [pool-1-thread-10] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-05-30 01:26:21,022] [pool-1-thread-3] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-05-30 01:26:21,379] [pool-1-thread-1] Initializing /data/misc/wtembryo.tiff: [testng] [2024-05-30 01:26:21,498] [pool-1-thread-10] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-05-30 01:26:21,864] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-05-30 01:26:22,070] [pool-1-thread-1] Initializing /data/jcb/SuppFig5D.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 52 seconds Finished: SUCCESS