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Started by upstream project "BIOFORMATS-test-repo" build number 79 originally caused by: Started by upstream project "Trigger" build number 87 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3621564776428144049.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12040_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:06:37,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:06:37,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:06:37,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:06:37,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:06:37,281 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:06:37,281 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:06:37,281 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:06:37,282 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:06:37,282 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration. [testng] 02:06:37,288 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point [testng] 02:06:37,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 430 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-30 02:06:37,303] [main] java.version = 21 [testng] 02:06:37,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:06:37,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:37,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-30_02-06-37.log] [testng] 02:06:37,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-30 02:06:37,369] [main] testng.directory = /data [testng] [2024-05-30 02:06:37,369] [main] testng.configDirectory = /config [testng] [2024-05-30 02:06:37,379] [main] testng.multiplier = 1.0 [testng] [2024-05-30 02:06:37,380] [main] testng.in-memory = false [testng] [2024-05-30 02:06:37,380] [main] testng.allow-missing = false [testng] [2024-05-30 02:06:37,380] [main] user.language = en [testng] [2024-05-30 02:06:37,380] [main] user.country = ${user.country} [testng] [2024-05-30 02:06:37,380] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-30 02:06:37,865] [main] ---------------------------------------- [testng] [2024-05-30 02:06:37,865] [main] Total files: 19 [testng] [2024-05-30 02:06:37,865] [main] Scan time: 0.485 s (25 ms/file) [testng] [2024-05-30 02:06:37,865] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-30 02:06:39,587] [pool-1-thread-1] Initializing /data/samples/200R PICT0002.MRW: [testng] 02:06:39,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:39,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:39,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-30_02-06-39.log] [testng] 02:06:39,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d8063dc - End of configuration. [testng] [2024-05-30 02:06:39,646] [pool-1-thread-12] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:06:39,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:39,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:39,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-30_02-06-39.log] [testng] 02:06:39,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ce37081 - End of configuration. [testng] [2024-05-30 02:06:39,686] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:06:39,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:39,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:39,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-30_02-06-39.log] [testng] 02:06:39,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6d5b38 - End of configuration. [testng] [2024-05-30 02:06:39,767] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 02:06:39,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:39,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:39,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-30_02-06-39.log] [testng] 02:06:39,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@498679da - End of configuration. [testng] [2024-05-30 02:06:39,879] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 02:06:39,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:39,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:39,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-30_02-06-39.log] [testng] 02:06:39,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42bcb890 - End of configuration. [testng] [2024-05-30 02:06:39,960] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 02:06:39,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:39,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:39,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-30_02-06-39.log] [testng] 02:06:39,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63632b3b - End of configuration. [testng] [2024-05-30 02:06:40,035] [pool-1-thread-7] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:06:40,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:40,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-30_02-06-40.log] [testng] 02:06:40,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2afd0497 - End of configuration. [testng] [2024-05-30 02:06:40,105] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:06:40,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:40,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-30_02-06-40.log] [testng] 02:06:40,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e054f13 - End of configuration. [testng] [2024-05-30 02:06:40,171] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:06:40,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:40,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-30_02-06-40.log] [testng] 02:06:40,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e4110fc - End of configuration. [testng] [2024-05-30 02:06:40,202] [pool-1-thread-4] Initializing /data/samples/800R PICT0010.MRW: [testng] 02:06:40,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:40,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-30_02-06-40.log] [testng] 02:06:40,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a3ee15 - End of configuration. [testng] [2024-05-30 02:06:40,243] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW: [testng] 02:06:40,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:40,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-30_02-06-40.log] [testng] 02:06:40,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@484a66c3 - End of configuration. [testng] [2024-05-30 02:06:40,290] [pool-1-thread-2] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:06:40,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:40,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-30_02-06-40.log] [testng] 02:06:40,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129d7398 - End of configuration. [testng] [2024-05-30 02:06:47,423] [pool-1-thread-6] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2024-05-30 02:06:47,442] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2024-05-30 02:06:47,462] [pool-1-thread-1] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-05-30 02:06:47,484] [pool-1-thread-11] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-05-30 02:06:47,527] [pool-1-thread-7] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2024-05-30 02:06:47,548] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-05-30 02:06:47,572] [pool-1-thread-8] Initializing /data/samples/100R PICT0001.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS