![[Jenkins]](/jenkins/static/cab80468/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 80 originally caused by: Started by upstream project "Trigger" build number 88 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6098486935977669741.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12120_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:01,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:01,649 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:22:01,649 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:01,650 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:01,650 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:01,651 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:01,651 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:01,651 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:01,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:01,652 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:01,652 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:01,652 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:01,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:01,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:01,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:01,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:01,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:01,997 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:01,997 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:01,998 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:01,998 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:22:01,999 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:22:01,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 347 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-31 01:22:02,014] [main] java.version = 1.8.0_342 [testng] 01:22:02,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:02,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:02,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_01-22-02.log] [testng] 01:22:02,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-31 01:22:02,094] [main] testng.directory = /data [testng] [2024-05-31 01:22:02,094] [main] testng.configDirectory = /config [testng] [2024-05-31 01:22:02,111] [main] testng.multiplier = 1.0 [testng] [2024-05-31 01:22:02,111] [main] testng.in-memory = false [testng] [2024-05-31 01:22:02,111] [main] testng.allow-missing = false [testng] [2024-05-31 01:22:02,111] [main] user.language = en [testng] [2024-05-31 01:22:02,111] [main] user.country = ${user.country} [testng] [2024-05-31 01:22:02,112] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-31 01:22:21,215] [main] ---------------------------------------- [testng] [2024-05-31 01:22:21,215] [main] Total files: 283 [testng] [2024-05-31 01:22:21,215] [main] Scan time: 19.103 s (67 ms/file) [testng] [2024-05-31 01:22:21,215] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-31 01:31:36,177] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 01:31:36,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:36,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:36,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_01-31-36.log] [testng] 01:31:36,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2537a1ce - End of configuration. [testng] [2024-05-31 01:31:36,247] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:31:36,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:36,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:36,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_01-31-36.log] [testng] 01:31:36,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd6bdc4 - End of configuration. [testng] [2024-05-31 01:31:36,340] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 01:31:36,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:36,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:36,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_01-31-36.log] [testng] 01:31:36,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e3e57d - End of configuration. [testng] [2024-05-31 01:31:36,399] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 01:31:36,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:36,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:36,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_01-31-36.log] [testng] 01:31:36,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ca7afd - End of configuration. [testng] [2024-05-31 01:31:37,058] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 01:31:37,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:37,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_01-31-37.log] [testng] 01:31:37,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ad31dc - End of configuration. [testng] [2024-05-31 01:31:37,106] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 01:31:37,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:37,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_01-31-37.log] [testng] 01:31:37,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b107a52 - End of configuration. [testng] [2024-05-31 01:31:37,171] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 01:31:37,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:37,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_01-31-37.log] [testng] 01:31:37,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb21b7f - End of configuration. [testng] [2024-05-31 01:31:37,246] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 01:31:37,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:37,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_01-31-37.log] [testng] 01:31:37,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42a7ba51 - End of configuration. [testng] [2024-05-31 01:31:37,317] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 01:31:37,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:37,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_01-31-37.log] [testng] 01:31:37,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4935f6ab - End of configuration. [testng] [2024-05-31 01:31:37,617] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:31:37,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:37,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_01-31-37.log] [testng] 01:31:37,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632d231c - End of configuration. [testng] [2024-05-31 01:31:37,683] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:31:37,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:37,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_01-31-37.log] [testng] 01:31:37,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20041be9 - End of configuration. [testng] [2024-05-31 01:31:37,703] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 01:31:37,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:37,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:37,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_01-31-37.log] [testng] 01:31:37,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f208a68 - End of configuration. [testng] [2024-05-31 01:31:40,379] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-05-31 01:31:40,713] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-05-31 01:31:40,769] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-05-31 01:31:40,979] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-05-31 01:31:41,038] [pool-1-thread-11] Initializing /data/olympus/XYZt.vsi: [testng] [2024-05-31 01:31:41,090] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-05-31 01:31:41,309] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-05-31 01:31:41,355] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-05-31 01:31:41,979] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-05-31 01:31:42,497] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-05-31 01:31:42,626] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-05-31 01:31:42,697] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-05-31 01:31:47,701] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-05-31 01:31:47,790] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-05-31 01:31:48,293] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-05-31 01:31:48,651] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-05-31 01:31:49,239] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-05-31 01:31:49,309] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-05-31 01:31:49,485] [pool-1-thread-4] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-05-31 01:31:49,676] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-05-31 01:31:50,197] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-05-31 01:31:50,367] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-05-31 01:31:51,018] [pool-1-thread-5] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-05-31 01:31:51,245] [pool-1-thread-2] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-05-31 01:31:51,367] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-05-31 01:31:51,448] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-05-31 01:32:19,505] [pool-1-thread-1] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-05-31 01:32:19,922] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-05-31 01:32:21,724] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-05-31 01:32:22,032] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-05-31 01:32:22,397] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-05-31 01:32:22,459] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-05-31 01:32:22,680] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-05-31 01:32:22,796] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-05-31 01:32:23,098] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-05-31 01:32:23,300] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-05-31 01:32:24,099] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-05-31 01:32:24,238] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-05-31 01:32:25,600] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-05-31 01:32:26,738] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-05-31 01:32:26,803] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-05-31 01:32:27,172] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-05-31 01:32:27,729] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-05-31 01:32:28,893] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-05-31 01:32:29,199] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-05-31 01:32:29,387] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-05-31 01:32:29,643] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-05-31 01:32:29,740] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-05-31 01:32:29,891] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-05-31 01:32:30,872] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-05-31 01:32:31,246] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-05-31 01:32:31,571] [pool-1-thread-2] Initializing /data/qa-17919/f10187.oir: [testng] [2024-05-31 01:33:02,310] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-05-31 01:33:02,642] [pool-1-thread-4] Initializing /data/qa-17270/image1.oir: [testng] [2024-05-31 01:33:02,737] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-05-31 01:33:03,224] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-05-31 01:33:03,269] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-05-31 01:33:03,308] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-05-31 01:33:03,872] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-05-31 01:33:03,934] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-05-31 01:33:06,202] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-05-31 01:33:06,658] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-05-31 01:33:07,258] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-05-31 01:33:07,641] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-05-31 01:33:08,141] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-05-31 01:33:08,292] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-05-31 01:33:08,349] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-05-31 01:33:10,348] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-05-31 01:33:11,445] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-05-31 01:33:11,890] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-05-31 01:33:12,775] [pool-1-thread-10] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-05-31 01:33:13,096] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-05-31 01:33:13,226] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-05-31 01:33:15,354] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir: [testng] [2024-05-31 01:33:22,988] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-05-31 01:33:23,971] [pool-1-thread-1] Initializing /data/olympus/XYZt.oir: [testng] [2024-05-31 01:33:31,782] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-05-31 01:33:31,875] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-05-31 01:33:32,117] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-05-31 01:33:34,477] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-05-31 01:33:36,010] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-05-31 01:33:36,558] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-05-31 01:33:37,436] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-05-31 01:33:37,985] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-05-31 01:33:41,542] [pool-1-thread-10] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-05-31 01:33:56,267] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-05-31 01:33:57,850] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-05-31 01:33:58,590] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-05-31 01:33:58,841] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-05-31 01:33:59,037] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-05-31 01:33:59,453] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-05-31 01:34:00,541] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-05-31 01:34:00,662] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-05-31 01:34:00,791] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-05-31 01:34:01,737] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-05-31 01:34:01,951] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-05-31 01:34:07,590] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-05-31 01:34:07,671] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-05-31 01:34:08,306] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-05-31 01:34:11,732] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-05-31 01:34:12,676] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-05-31 01:34:12,957] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-05-31 01:34:15,578] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-05-31 01:34:16,125] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-05-31 01:34:17,267] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-05-31 01:34:17,981] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-05-31 01:34:18,396] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-05-31 01:34:18,646] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-05-31 01:34:19,136] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir: [testng] [2024-05-31 01:35:05,819] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-05-31 01:35:06,250] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-05-31 01:35:09,774] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-05-31 01:35:22,240] [pool-1-thread-9] Initializing /data/qa-17335/1.oir: [testng] [2024-05-31 01:35:22,926] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-05-31 01:35:24,205] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-05-31 01:35:24,934] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-05-31 01:35:25,754] [pool-1-thread-9] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-05-31 01:35:26,940] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-05-31 01:35:28,006] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-05-31 01:35:29,295] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-05-31 01:35:30,447] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-05-31 01:35:31,648] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-05-31 01:35:53,330] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-05-31 01:36:04,293] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-05-31 01:36:08,617] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-05-31 01:36:09,905] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-05-31 01:36:11,019] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-05-31 01:36:11,943] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-05-31 01:36:13,557] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-05-31 01:36:14,344] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-05-31 01:36:15,146] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-05-31 01:36:16,838] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-05-31 01:36:27,531] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-05-31 01:36:27,836] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-05-31 01:36:29,063] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-05-31 01:36:29,280] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-05-31 01:36:30,209] [pool-1-thread-6] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-05-31 01:36:30,688] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-05-31 01:36:32,123] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-05-31 01:36:33,194] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-05-31 01:36:33,413] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-05-31 01:36:34,684] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-05-31 01:36:35,509] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-05-31 01:36:35,834] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-05-31 01:36:39,249] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-05-31 01:36:39,746] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-05-31 01:36:40,864] [pool-1-thread-6] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-05-31 01:36:41,163] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-05-31 01:36:42,023] [pool-1-thread-6] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-05-31 01:36:50,159] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-05-31 01:36:50,382] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-05-31 01:36:51,266] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-05-31 01:36:51,468] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-05-31 01:39:00,173] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-05-31 01:39:27,460] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-05-31 01:39:28,107] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-05-31 01:39:29,232] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-05-31 01:39:30,585] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-05-31 01:39:31,743] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-05-31 01:39:33,016] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-05-31 01:39:33,873] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-05-31 01:39:35,048] [pool-1-thread-4] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-05-31 01:39:39,131] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-05-31 01:39:47,142] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-05-31 01:39:49,064] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-05-31 01:39:50,616] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-05-31 01:39:52,393] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-05-31 01:39:53,853] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-05-31 01:39:55,858] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-05-31 01:39:57,190] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-05-31 01:39:58,228] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-05-31 01:40:04,482] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-05-31 01:40:05,477] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-05-31 01:40:05,656] [pool-1-thread-4] Initializing /data/qa-16871/Clipboard.tif: [testng] 02:36:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:36:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:38,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_02-36-38.log] [testng] 02:36:38,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 74 minutes 41 seconds Finished: SUCCESS