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Started by upstream project "BIOFORMATS-test-repo" build number 80 originally caused by: Started by upstream project "Trigger" build number 88 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15087788074657389188.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12160_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:32:07,261 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:32:07,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:32:07,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:32:07,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:32:07,264 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:32:07,264 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:32:07,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:32:07,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:32:07,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:32:07,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:32:07,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:32:07,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:32:07,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:32:07,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:32:07,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:32:07,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:32:07,602 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:32:07,602 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:32:07,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:32:07,603 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:32:07,603 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:32:07,604 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:32:07,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-31 01:32:07,617] [main] java.version = 1.8.0_342 [testng] 01:32:07,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:32:07,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:07,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_01-32-07.log] [testng] 01:32:07,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-31 01:32:07,671] [main] testng.directory = /data [testng] [2024-05-31 01:32:07,671] [main] testng.configDirectory = /config [testng] [2024-05-31 01:32:07,684] [main] testng.multiplier = 1.0 [testng] [2024-05-31 01:32:07,684] [main] testng.in-memory = false [testng] [2024-05-31 01:32:07,684] [main] testng.allow-missing = false [testng] [2024-05-31 01:32:07,684] [main] user.language = en [testng] [2024-05-31 01:32:07,684] [main] user.country = ${user.country} [testng] [2024-05-31 01:32:07,684] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-31 01:32:08,102] [main] ---------------------------------------- [testng] [2024-05-31 01:32:08,103] [main] Total files: 25 [testng] [2024-05-31 01:32:08,103] [main] Scan time: 0.418 s (16 ms/file) [testng] [2024-05-31 01:32:08,103] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-31 01:32:10,051] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] 01:32:10,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:10,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_01-32-10.log] [testng] 01:32:10,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3292638a - End of configuration. [testng] [2024-05-31 01:32:10,078] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 01:32:10,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:10,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_01-32-10.log] [testng] 01:32:10,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4092618a - End of configuration. [testng] [2024-05-31 01:32:10,090] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:32:10,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:10,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_01-32-10.log] [testng] 01:32:10,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration. [testng] [2024-05-31 01:32:10,100] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:32:10,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:10,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_01-32-10.log] [testng] 01:32:10,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46777794 - End of configuration. [testng] [2024-05-31 01:32:10,117] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:32:10,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:10,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_01-32-10.log] [testng] 01:32:10,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@329dd019 - End of configuration. [testng] [2024-05-31 01:32:10,254] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict: [testng] 01:32:10,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:10,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_01-32-10.log] [testng] 01:32:10,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a9500a - End of configuration. [testng] [2024-05-31 01:32:10,267] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] 01:32:10,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:10,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_01-32-10.log] [testng] 01:32:10,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f3d9c0 - End of configuration. [testng] [2024-05-31 01:32:10,278] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict: [testng] 01:32:10,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:10,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_01-32-10.log] [testng] 01:32:10,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5bbb20 - End of configuration. [testng] [2024-05-31 01:32:10,287] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:32:10,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:10,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_01-32-10.log] [testng] 01:32:10,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126fdf22 - End of configuration. [testng] [2024-05-31 01:32:10,349] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] 01:32:10,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:10,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_01-32-10.log] [testng] 01:32:10,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ed440f - End of configuration. [testng] [2024-05-31 01:32:10,381] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT: [testng] 01:32:10,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:10,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_01-32-10.log] [testng] 01:32:10,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681e74f9 - End of configuration. [testng] [2024-05-31 01:32:10,421] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 01:32:10,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:10,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:10,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_01-32-10.log] [testng] 01:32:10,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274a5a38 - End of configuration. [testng] [2024-05-31 01:32:12,006] [pool-1-thread-7] Initializing /data/jqd/32bit.pict: [testng] [2024-05-31 01:32:12,033] [pool-1-thread-11] Initializing /data/misc/planet2.pict: [testng] [2024-05-31 01:32:12,053] [pool-1-thread-6] Initializing /data/misc/planet.pict: [testng] [2024-05-31 01:32:12,076] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-05-31 01:32:12,083] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-05-31 01:32:12,098] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-05-31 01:32:12,115] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-05-31 01:32:12,141] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] [2024-05-31 01:32:12,158] [pool-1-thread-2] Initializing /data/misc/planet.png: [testng] [2024-05-31 01:32:12,161] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] [2024-05-31 01:32:12,208] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] [2024-05-31 01:32:12,524] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-05-31 01:32:12,790] [pool-1-thread-2] Initializing /data/brian/images/WHT.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS