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Started by upstream project "BIOFORMATS-test-repo" build number 80 originally caused by: Started by upstream project "Trigger" build number 88 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15162057624663275909.sh + '[' picoquant = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12179_merge_ci -v /uod/idr/repos/curated/picoquant:/data -v /uod/idr-scratch/merge-ci/curated/picoquant:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:46:55,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:46:55,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:46:55,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:55,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:55,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:46:55,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:46:55,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:46:55,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:55,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:55,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:46:55,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:46:55,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:46:55,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:46:55,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:46:55,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:46:55,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:46:55,287 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:46:55,287 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:46:55,287 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:46:55,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:46:55,288 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:46:55,289 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:46:55,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-31 01:46:55,300] [main] java.version = 1.8.0_342 [testng] 01:46:55,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:46:55,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:55,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_01-46-55.log] [testng] 01:46:55,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-31 01:46:55,356] [main] testng.directory = /data [testng] [2024-05-31 01:46:55,356] [main] testng.configDirectory = /config [testng] [2024-05-31 01:46:55,369] [main] testng.multiplier = 1.0 [testng] [2024-05-31 01:46:55,369] [main] testng.in-memory = false [testng] [2024-05-31 01:46:55,369] [main] testng.allow-missing = false [testng] [2024-05-31 01:46:55,369] [main] user.language = en [testng] [2024-05-31 01:46:55,369] [main] user.country = ${user.country} [testng] [2024-05-31 01:46:55,369] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-31 01:46:56,088] [main] ---------------------------------------- [testng] [2024-05-31 01:46:56,088] [main] Total files: 8 [testng] [2024-05-31 01:46:56,088] [main] Scan time: 0.719 s (89 ms/file) [testng] [2024-05-31 01:46:56,088] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 8 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-31 01:46:56,725] [pool-1-thread-1] Initializing /data/qa-9505/GFP_and_mRFP_FRET.bin: [testng] 01:46:56,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:46:56,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:56,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_01-46-56.log] [testng] 01:46:56,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2300ef3c - End of configuration. [testng] [2024-05-31 01:46:56,982] [pool-1-thread-8] Initializing /data/qa-17095/IRF_256.bin: [testng] 01:46:56,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:46:56,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:56,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_01-46-56.log] [testng] 01:46:56,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@628228e1 - End of configuration. [testng] [2024-05-31 01:46:57,001] [pool-1-thread-7] Initializing /data/neil/PollenGrainsSymPhoTime.png: [testng] 01:46:57,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:46:57,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:57,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_01-46-57.log] [testng] 01:46:57,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72bd6fa6 - End of configuration. [testng] [2024-05-31 01:46:57,009] [pool-1-thread-6] Initializing /data/qa-17134/VLDLR_mGFP_with_ligand.bin: [testng] 01:46:57,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:46:57,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:57,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_01-46-57.log] [testng] 01:46:57,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331fe4f4 - End of configuration. [testng] [2024-05-31 01:46:57,030] [pool-1-thread-5] Initializing /data/qa-9434/DaisyPollen.bin: [testng] 01:46:57,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:46:57,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:57,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_01-46-57.log] [testng] 01:46:57,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146706b0 - End of configuration. [testng] [2024-05-31 01:46:57,052] [pool-1-thread-4] Initializing /data/neil/PollenGrains.bin: [testng] 01:46:57,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:46:57,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:57,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_01-46-57.log] [testng] 01:46:57,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b67832d - End of configuration. [testng] [2024-05-31 01:46:57,080] [pool-1-thread-3] Initializing /data/neil/PollenGrains.bmp: [testng] 01:46:57,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:46:57,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:57,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_01-46-57.log] [testng] 01:46:57,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f323388 - End of configuration. [testng] [2024-05-31 01:46:57,089] [pool-1-thread-2] Initializing /data/qa-9505/CENP-labelled_cells_for_FRET.bin: [testng] 01:46:57,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:46:57,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:57,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_01-46-57.log] [testng] 01:46:57,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b3bd04 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 424, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 seconds Finished: SUCCESS