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Started by upstream project "BIOFORMATS-test-repo" build number 80 originally caused by: Started by upstream project "Trigger" build number 88 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18418054198323195627.sh + '[' avi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12195_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:03:19,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:03:19,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:19,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:19,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:19,526 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:19,526 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:19,526 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:19,527 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:19,527 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:03:19,528 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:03:19,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 518 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-31 02:03:19,551] [main] java.version = 1.8.0_342 [testng] 02:03:19,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:19,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:19,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_02-03-19.log] [testng] 02:03:19,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-31 02:03:19,764] [main] testng.directory = /data [testng] [2024-05-31 02:03:19,764] [main] testng.configDirectory = /config [testng] [2024-05-31 02:03:19,863] [main] testng.multiplier = 1.0 [testng] [2024-05-31 02:03:19,864] [main] testng.in-memory = false [testng] [2024-05-31 02:03:19,864] [main] testng.allow-missing = false [testng] [2024-05-31 02:03:19,864] [main] user.language = en [testng] [2024-05-31 02:03:19,864] [main] user.country = ${user.country} [testng] [2024-05-31 02:03:19,864] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-31 02:03:21,236] [main] ---------------------------------------- [testng] [2024-05-31 02:03:21,236] [main] Total files: 40 [testng] [2024-05-31 02:03:21,236] [main] Scan time: 1.372 s (34 ms/file) [testng] [2024-05-31 02:03:21,236] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-31 02:07:51,195] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 02:07:51,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:51,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:51,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_02-07-51.log] [testng] 02:07:51,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@542bc68f - End of configuration. [testng] [2024-05-31 02:07:51,297] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:07:51,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:51,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:51,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_02-07-51.log] [testng] 02:07:51,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64872b49 - End of configuration. [testng] [2024-05-31 02:07:51,376] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 02:07:51,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:51,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:51,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_02-07-51.log] [testng] 02:07:51,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efb6239 - End of configuration. [testng] [2024-05-31 02:07:51,475] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:07:51,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:51,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:51,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_02-07-51.log] [testng] 02:07:51,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@176f716a - End of configuration. [testng] [2024-05-31 02:07:51,589] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 02:07:51,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:51,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:51,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_02-07-51.log] [testng] 02:07:51,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ebebce - End of configuration. [testng] [2024-05-31 02:07:51,601] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] 02:07:51,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:51,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:51,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_02-07-51.log] [testng] 02:07:51,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44cb5c7f - End of configuration. [testng] [2024-05-31 02:07:57,179] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 02:07:57,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:57,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:57,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_02-07-57.log] [testng] 02:07:57,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb4b8f3 - End of configuration. [testng] [2024-05-31 02:08:09,878] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:08:09,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:09,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:09,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_02-08-09.log] [testng] 02:08:09,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a710d6 - End of configuration. [testng] [2024-05-31 02:08:10,858] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:08:10,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:10,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:10,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_02-08-10.log] [testng] 02:08:10,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22b4a19f - End of configuration. [testng] [2024-05-31 02:08:10,924] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:08:10,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:10,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:10,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_02-08-10.log] [testng] 02:08:10,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@465fcead - End of configuration. [testng] [2024-05-31 02:08:10,938] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:08:10,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:10,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:10,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_02-08-10.log] [testng] 02:08:10,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d880a0e - End of configuration. [testng] [2024-05-31 02:08:11,161] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:08:11,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:11,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_02-08-11.log] [testng] 02:08:11,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d850cb - End of configuration. [testng] [2024-05-31 02:08:13,940] [pool-1-thread-9] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-05-31 02:08:13,950] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-05-31 02:08:14,255] [pool-1-thread-5] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-05-31 02:08:14,463] [pool-1-thread-4] Initializing /data/kurt/63x_6um.avi: [testng] [2024-05-31 02:08:14,818] [pool-1-thread-3] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-05-31 02:08:14,927] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-05-31 02:08:15,054] [pool-1-thread-2] Initializing /data/william/worm.avi: [testng] [2024-05-31 02:08:15,068] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-05-31 02:08:15,405] [pool-1-thread-10] Initializing /data/ascb/TIRF.avi: [testng] [2024-05-31 02:08:15,847] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-05-31 02:08:16,198] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-05-31 02:08:16,297] [pool-1-thread-2] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-05-31 02:08:17,011] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-05-31 02:09:44,502] [pool-1-thread-5] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-05-31 02:09:45,408] [pool-1-thread-12] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-05-31 02:09:45,524] [pool-1-thread-1] Initializing /data/kurt/40x_6um.avi: [testng] [2024-05-31 02:09:45,809] [pool-1-thread-6] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-05-31 02:09:45,903] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-05-31 02:09:45,946] [pool-1-thread-7] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-05-31 02:09:45,968] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-05-31 02:09:46,271] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-05-31 02:09:46,548] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-05-31 02:09:47,716] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-05-31 02:09:47,799] [pool-1-thread-11] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-05-31 02:09:49,204] [pool-1-thread-7] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-05-31 02:09:49,642] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 45 seconds Finished: SUCCESS