![[Jenkins]](/jenkins/static/9ed1fe1f/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 80 originally caused by: Started by upstream project "Trigger" build number 88 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11642499546477350590.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12243_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:35:51,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:35:51,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:35:51,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:35:51,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:35:51,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:35:51,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:35:51,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:35:51,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:35:51,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:35:51,141 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:35:51,141 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:35:51,141 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:35:51,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:35:51,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:35:51,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:35:51,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:35:51,406 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:35:51,406 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:35:51,406 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:35:51,406 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:35:51,407 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:35:51,407 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:35:51,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-31 02:35:51,417] [main] java.version = 1.8.0_342 [testng] 02:35:51,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:35:51,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:51,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-31_02-35-51.log] [testng] 02:35:51,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-31 02:35:51,470] [main] testng.directory = /data [testng] [2024-05-31 02:35:51,470] [main] testng.configDirectory = /config [testng] [2024-05-31 02:35:51,482] [main] testng.multiplier = 1.0 [testng] [2024-05-31 02:35:51,482] [main] testng.in-memory = false [testng] [2024-05-31 02:35:51,482] [main] testng.allow-missing = false [testng] [2024-05-31 02:35:51,482] [main] user.language = en [testng] [2024-05-31 02:35:51,482] [main] user.country = ${user.country} [testng] [2024-05-31 02:35:51,482] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-31 02:35:52,315] [main] ---------------------------------------- [testng] [2024-05-31 02:35:52,315] [main] Total files: 32 [testng] [2024-05-31 02:35:52,315] [main] Scan time: 0.832 s (26 ms/file) [testng] [2024-05-31 02:35:52,315] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-31 02:35:55,260] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:35:55,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:35:55,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-31_02-35-55.log] [testng] 02:35:55,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2531d5df - End of configuration. [testng] [2024-05-31 02:35:55,278] [pool-1-thread-12] Initializing /data/geert/good example1.1sc.jpg: [testng] 02:35:55,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:35:55,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-31_02-35-55.log] [testng] 02:35:55,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@543677f1 - End of configuration. [testng] [2024-05-31 02:35:55,297] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 02:35:55,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:35:55,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-31_02-35-55.log] [testng] 02:35:55,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7536500a - End of configuration. [testng] [2024-05-31 02:35:55,354] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] 02:35:55,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:35:55,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-31_02-35-55.log] [testng] 02:35:55,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e68e41 - End of configuration. [testng] [2024-05-31 02:35:55,409] [pool-1-thread-9] Initializing /data/qa-29469/bad3.1sc: [testng] 02:35:55,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:35:55,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-31_02-35-55.log] [testng] 02:35:55,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@463e2c2c - End of configuration. [testng] [2024-05-31 02:35:55,463] [pool-1-thread-8] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:35:55,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:35:55,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-31_02-35-55.log] [testng] 02:35:55,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@513714d3 - End of configuration. [testng] [2024-05-31 02:35:55,498] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 02:35:55,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:35:55,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-31_02-35-55.log] [testng] 02:35:55,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a8fe89 - End of configuration. [testng] [2024-05-31 02:35:55,543] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc: [testng] 02:35:55,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:35:55,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-31_02-35-55.log] [testng] 02:35:55,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddf3af3 - End of configuration. [testng] [2024-05-31 02:35:55,561] [pool-1-thread-5] Initializing /data/keith/test2.1sc: [testng] 02:35:55,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:35:55,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-31_02-35-55.log] [testng] 02:35:55,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b75fb08 - End of configuration. [testng] [2024-05-31 02:35:55,581] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 02:35:55,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:35:55,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-31_02-35-55.log] [testng] 02:35:55,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c4753c - End of configuration. [testng] [2024-05-31 02:35:55,608] [pool-1-thread-3] Initializing /data/keith/pg020410saur3.1sc: [testng] 02:35:55,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:35:55,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-31_02-35-55.log] [testng] 02:35:55,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e3ff06e - End of configuration. [testng] [2024-05-31 02:35:55,626] [pool-1-thread-2] Initializing /data/keith/test.1sc: [testng] 02:35:55,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:35:55,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:55,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-31_02-35-55.log] [testng] 02:35:55,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ad9d2ad - End of configuration. [testng] [2024-05-31 02:35:57,277] [pool-1-thread-1] Initializing /data/adrian/test_img.1sc: [testng] [2024-05-31 02:35:57,306] [pool-1-thread-5] Initializing /data/samples/Criterion.1sc: [testng] [2024-05-31 02:35:57,334] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-05-31 02:35:57,403] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-05-31 02:35:57,425] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-05-31 02:35:57,448] [pool-1-thread-9] Initializing /data/qa-29459/bad.1sc: [testng] [2024-05-31 02:35:57,480] [pool-1-thread-6] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-05-31 02:35:57,509] [pool-1-thread-12] Initializing /data/geert/bad example1.1sc: [testng] [2024-05-31 02:35:57,802] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-05-31 02:35:57,888] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg: [testng] [2024-05-31 02:35:57,923] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-05-31 02:35:58,068] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg: [testng] [2024-05-31 02:35:58,571] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc: [testng] [2024-05-31 02:35:58,727] [pool-1-thread-6] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-05-31 02:35:58,858] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-05-31 02:35:58,906] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-05-31 02:35:59,129] [pool-1-thread-3] Initializing /data/qa-29469/good.1sc: [testng] [2024-05-31 02:35:59,322] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-05-31 02:35:59,355] [pool-1-thread-9] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-05-31 02:35:59,378] [pool-1-thread-2] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS