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Started by upstream project "BIOFORMATS-test-repo" build number 81 originally caused by: Started by upstream project "Trigger" build number 89 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10195558247264573140.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12274_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:21:46,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:46,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:21:46,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:46,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:46,496 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:46,496 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:46,496 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:46,496 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:46,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:46,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:46,498 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:46,498 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:46,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:46,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:46,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:46,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:46,708 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:46,708 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:46,709 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:46,709 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:46,709 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:21:46,710 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:21:46,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 213 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-01 01:21:46,719] [main] java.version = 11.0.16 [testng] 01:21:46,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:46,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:46,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-01_01-21-46.log] [testng] 01:21:46,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-01 01:21:46,765] [main] testng.directory = /data [testng] [2024-06-01 01:21:46,765] [main] testng.configDirectory = /config [testng] [2024-06-01 01:21:46,774] [main] testng.multiplier = 1.0 [testng] [2024-06-01 01:21:46,776] [main] testng.in-memory = false [testng] [2024-06-01 01:21:46,776] [main] testng.allow-missing = false [testng] [2024-06-01 01:21:46,776] [main] user.language = en [testng] [2024-06-01 01:21:46,776] [main] user.country = ${user.country} [testng] [2024-06-01 01:21:46,776] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-01 01:21:47,238] [main] ---------------------------------------- [testng] [2024-06-01 01:21:47,238] [main] Total files: 36 [testng] [2024-06-01 01:21:47,238] [main] Scan time: 0.462 s (12 ms/file) [testng] [2024-06-01 01:21:47,238] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-01 01:21:49,954] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:21:49,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:49,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:49,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-01_01-21-49.log] [testng] 01:21:49,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7247dbeb - End of configuration. [testng] [2024-06-01 01:21:50,018] [pool-1-thread-12] Initializing /data/generated/mri-stack8.pcx: [testng] 01:21:50,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:50,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-01_01-21-50.log] [testng] 01:21:50,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df5d42e - End of configuration. [testng] [2024-06-01 01:21:50,027] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx: [testng] 01:21:50,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:50,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-01_01-21-50.log] [testng] 01:21:50,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368ecaa7 - End of configuration. [testng] [2024-06-01 01:21:50,034] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 01:21:50,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:50,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-01_01-21-50.log] [testng] 01:21:50,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e6526b - End of configuration. [testng] [2024-06-01 01:21:50,050] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:21:50,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:50,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-01_01-21-50.log] [testng] 01:21:50,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609c2ab2 - End of configuration. [testng] [2024-06-01 01:21:50,061] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:21:50,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:50,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-01_01-21-50.log] [testng] 01:21:50,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@234d90b4 - End of configuration. [testng] [2024-06-01 01:21:50,078] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] 01:21:50,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:50,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-01_01-21-50.log] [testng] 01:21:50,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50302d11 - End of configuration. [testng] [2024-06-01 01:21:50,085] [pool-1-thread-6] Initializing /data/generated/mri-stack7.pcx: [testng] 01:21:50,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:50,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-01_01-21-50.log] [testng] 01:21:50,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c05358e - End of configuration. [testng] [2024-06-01 01:21:50,091] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] 01:21:50,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:50,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-01_01-21-50.log] [testng] 01:21:50,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8305c7 - End of configuration. [testng] [2024-06-01 01:21:50,096] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 01:21:50,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:50,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-01_01-21-50.log] [testng] 01:21:50,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@740d9745 - End of configuration. [testng] [2024-06-01 01:21:50,111] [pool-1-thread-3] Initializing /data/generated/mri-stack21.pcx: [testng] 01:21:50,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:50,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-01_01-21-50.log] [testng] 01:21:50,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5144c452 - End of configuration. [testng] [2024-06-01 01:21:50,128] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx: [testng] 01:21:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:50,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-01_01-21-50.log] [testng] 01:21:50,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a3f62a - End of configuration. [testng] [2024-06-01 01:21:52,118] [pool-1-thread-7] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-06-01 01:21:52,121] [pool-1-thread-12] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-06-01 01:21:52,125] [pool-1-thread-11] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-06-01 01:21:52,130] [pool-1-thread-9] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-06-01 01:21:52,134] [pool-1-thread-2] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-06-01 01:21:52,137] [pool-1-thread-5] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-06-01 01:21:52,140] [pool-1-thread-6] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-06-01 01:21:52,146] [pool-1-thread-3] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-06-01 01:21:52,151] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-06-01 01:21:52,154] [pool-1-thread-8] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-06-01 01:21:52,157] [pool-1-thread-4] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-06-01 01:21:52,160] [pool-1-thread-1] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-06-01 01:21:52,372] [pool-1-thread-9] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-06-01 01:21:52,397] [pool-1-thread-10] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-06-01 01:21:52,400] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-06-01 01:21:52,431] [pool-1-thread-1] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-06-01 01:21:52,437] [pool-1-thread-5] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-06-01 01:21:52,480] [pool-1-thread-3] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-06-01 01:21:52,486] [pool-1-thread-12] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-06-01 01:21:52,491] [pool-1-thread-6] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-06-01 01:21:52,494] [pool-1-thread-2] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-06-01 01:21:52,499] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-06-01 01:21:52,505] [pool-1-thread-7] Initializing /data/generated/mri-stack17.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS