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Started by upstream project "BIOFORMATS-test-repo" build number 81 originally caused by: Started by upstream project "Trigger" build number 89 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11308337646944704116.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12358_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:57:30,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:57:30,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:57:30,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:57:30,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:57:30,574 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:57:30,575 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:57:30,576 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:57:30,577 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:57:30,577 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:57:30,579 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:57:30,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 503 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-01 01:57:30,612] [main] java.version = 11.0.16 [testng] 01:57:30,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:57:30,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:30,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-01_01-57-30.log] [testng] 01:57:30,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-01 01:57:30,717] [main] testng.directory = /data [testng] [2024-06-01 01:57:30,718] [main] testng.configDirectory = /config [testng] [2024-06-01 01:57:30,738] [main] testng.multiplier = 1.0 [testng] [2024-06-01 01:57:30,742] [main] testng.in-memory = false [testng] [2024-06-01 01:57:30,742] [main] testng.allow-missing = false [testng] [2024-06-01 01:57:30,742] [main] user.language = en [testng] [2024-06-01 01:57:30,742] [main] user.country = ${user.country} [testng] [2024-06-01 01:57:30,742] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-01 02:04:45,051] [main] ---------------------------------------- [testng] [2024-06-01 02:04:45,051] [main] Total files: 7329 [testng] [2024-06-01 02:04:45,052] [main] Scan time: 434.308 s (59 ms/file) [testng] [2024-06-01 02:04:45,052] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-01 02:08:10,798] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:08:10,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:10,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:10,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-01_02-08-10.log] [testng] 02:08:10,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61512d92 - End of configuration. [testng] [2024-06-01 02:08:10,892] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-01 02:08:10,897] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:08:10,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:10,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:10,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-01_02-08-10.log] [testng] 02:08:10,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f3ec56a - End of configuration. [testng] [2024-06-01 02:08:11,502] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:08:11,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:11,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-01_02-08-11.log] [testng] 02:08:11,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c344c7d - End of configuration. [testng] [2024-06-01 02:08:11,600] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:08:11,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:11,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-01_02-08-11.log] [testng] 02:08:11,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ecd4d4b - End of configuration. [testng] [2024-06-01 02:08:11,680] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:08:11,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:11,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-01_02-08-11.log] [testng] 02:08:11,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d02cbd9 - End of configuration. [testng] [2024-06-01 02:08:11,739] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-01 02:08:11,741] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:08:11,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:11,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-01_02-08-11.log] [testng] 02:08:11,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f37b0b - End of configuration. [testng] [2024-06-01 02:08:11,806] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:08:11,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:11,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-01_02-08-11.log] [testng] 02:08:11,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c4e0ffa - End of configuration. [testng] [2024-06-01 02:08:11,834] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:08:11,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:11,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-01_02-08-11.log] [testng] 02:08:11,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@537ecc39 - End of configuration. [testng] [2024-06-01 02:08:11,916] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:08:11,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:11,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:11,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-01_02-08-11.log] [testng] 02:08:11,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128c16c5 - End of configuration. [testng] [2024-06-01 02:08:11,999] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-01 02:08:12,005] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:08:12,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:12,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:12,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-01_02-08-12.log] [testng] 02:08:12,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ef1aa14 - End of configuration. [testng] [2024-06-01 02:08:12,210] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:08:12,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:12,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:12,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-01_02-08-12.log] [testng] 02:08:12,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50d62e73 - End of configuration. [testng] [2024-06-01 02:08:12,288] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:08:12,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:12,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:12,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-01_02-08-12.log] [testng] 02:08:12,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d480f5e - End of configuration. [testng] [2024-06-01 02:08:14,561] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-01 02:08:15,733] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-01 02:08:17,104] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-01 02:08:17,492] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-01 02:08:17,852] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-01 02:08:17,922] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-01 02:08:18,509] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-01 02:08:18,584] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-01 02:08:19,016] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-01 02:08:19,673] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-01 02:08:19,929] [pool-1-thread-1] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-01 02:08:20,326] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-01 02:08:20,443] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-06-01 02:08:20,500] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-01 02:08:20,667] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-01 02:08:20,726] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-01 02:08:20,889] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-01 02:08:21,014] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-01 02:08:22,925] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-01 02:08:23,102] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-01 02:08:23,392] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-01 02:08:23,624] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-01 02:08:23,733] [pool-1-thread-7] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-01 02:08:23,908] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-01 02:08:24,288] [pool-1-thread-7] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-01 02:08:26,816] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-01 02:08:26,990] [pool-1-thread-6] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-01 02:08:27,180] [pool-1-thread-3] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-01 02:08:27,606] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-06-01 02:08:29,409] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-01 02:08:30,090] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-01 02:08:30,192] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-01 02:08:30,300] [pool-1-thread-8] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-01 02:08:30,762] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-01 02:08:34,630] [pool-1-thread-4] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-01 02:08:34,930] [pool-1-thread-9] Initializing /data/samples/zserEight.stk: [testng] [2024-06-01 02:08:35,431] [pool-1-thread-9] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-01 02:08:35,608] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-01 02:08:35,760] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-01 02:08:35,855] [pool-1-thread-1] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-01 02:09:09,275] [pool-1-thread-8] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-01 02:09:09,572] [pool-1-thread-11] Initializing /data/samples/zser24.stk: [testng] [2024-06-01 02:09:09,769] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-01 02:09:10,054] [pool-1-thread-11] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-01 02:09:10,434] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-01 02:09:10,739] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-01 02:09:10,943] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-01 02:09:11,196] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-01 02:09:13,505] [pool-1-thread-5] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-01 02:09:15,823] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-01 02:09:16,087] [pool-1-thread-8] Initializing 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[pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-01 02:09:19,990] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-01 02:09:20,119] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-01 02:09:20,385] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-01 02:09:20,614] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-01 02:09:20,843] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-01 02:09:21,135] [pool-1-thread-7] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-01 02:09:23,504] [pool-1-thread-3] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-01 02:09:24,374] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-06-01 02:09:24,482] 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IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-01 02:09:26,546] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-01 02:09:26,917] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-01 02:09:28,064] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-01 02:09:29,474] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-01 02:09:29,676] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-01 02:09:29,876] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-01 02:09:30,249] [pool-1-thread-5] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-01 02:09:30,907] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-01 02:09:30,982] [pool-1-thread-10] Used files list does not include 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[2024-06-01 02:10:01,780] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-01 02:10:01,887] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-01 02:10:04,260] [pool-1-thread-4] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-01 02:10:05,216] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-06-01 02:10:05,433] [pool-1-thread-2] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-01 02:10:05,801] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-01 02:10:06,048] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-01 02:10:06,251] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-06-01 02:10:07,321] [pool-1-thread-4] Initializing 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/data/grant/XYZ_Image.STK: [testng] [2024-06-01 02:10:10,749] [pool-1-thread-9] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-01 02:10:10,961] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-01 02:10:11,052] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-01 02:10:11,054] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-01 02:10:11,089] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-01 02:10:11,529] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-01 02:10:11,890] [pool-1-thread-11] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-01 02:10:14,564] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-01 02:10:14,679] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-01 02:10:14,784] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-01 02:10:15,514] [pool-1-thread-4] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-01 02:10:22,710] [pool-1-thread-3] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-01 02:10:23,010] [pool-1-thread-9] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-01 02:10:24,075] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-01 02:10:24,301] [pool-1-thread-2] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-01 02:10:27,695] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-01 02:10:27,762] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-01 02:10:28,004] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-01 02:10:28,601] [pool-1-thread-12] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-01 02:10:28,957] [pool-1-thread-10] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-01 02:10:29,606] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-01 02:10:29,934] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-01 02:10:32,008] [pool-1-thread-8] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-01 02:10:32,545] [pool-1-thread-12] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-01 02:10:32,681] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-01 02:10:33,519] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-01 02:10:33,663] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-01 02:10:33,985] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-01 02:10:35,655] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-01 02:10:35,897] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-01 02:10:36,020] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-01 02:10:36,095] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-01 02:10:36,150] [pool-1-thread-12] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-01 02:10:37,048] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-01 02:10:37,217] [pool-1-thread-10] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-01 02:10:37,288] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-01 02:10:38,863] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-01 02:10:38,958] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-01 02:10:38,983] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-01 02:10:39,297] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-01 02:10:39,719] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-01 02:10:39,959] [pool-1-thread-11] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-01 02:10:40,281] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-01 02:10:40,380] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-01 02:10:40,944] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-01 02:10:41,152] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-01 02:10:41,617] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-01 02:10:42,572] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-01 02:10:42,792] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-01 02:10:42,919] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-01 02:10:43,412] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-01 02:10:43,580] [pool-1-thread-9] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-01 02:10:45,194] [pool-1-thread-10] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-01 02:10:45,472] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-01 02:10:45,636] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-01 02:10:45,863] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-01 02:10:45,954] [pool-1-thread-5] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 54 seconds Finished: SUCCESS