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Started by upstream project "BIOFORMATS-test-repo" build number 82 originally caused by: Started by upstream project "Trigger" build number 92 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11840285933474176008.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12522_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:54:58,384 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:54:58,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:54:58,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:54:58,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:54:58,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:54:58,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:54:58,389 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:54:58,389 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:54:58,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:54:58,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:54:58,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:54:58,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:54:58,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:54:58,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:54:58,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:54:58,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:54:58,662 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:54:58,662 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:54:58,662 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:54:58,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:54:58,663 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:54:58,664 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:54:58,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-04 01:54:58,674] [main] java.version = 11.0.16 [testng] 01:54:58,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:54:58,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:58,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-04_01-54-58.log] [testng] 01:54:58,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-04 01:54:58,728] [main] testng.directory = /data [testng] [2024-06-04 01:54:58,728] [main] testng.configDirectory = /config [testng] [2024-06-04 01:54:58,740] [main] testng.multiplier = 1.0 [testng] [2024-06-04 01:54:58,741] [main] testng.in-memory = false [testng] [2024-06-04 01:54:58,741] [main] testng.allow-missing = false [testng] [2024-06-04 01:54:58,741] [main] user.language = en [testng] [2024-06-04 01:54:58,741] [main] user.country = ${user.country} [testng] [2024-06-04 01:54:58,742] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-04 02:02:20,335] [main] ---------------------------------------- [testng] [2024-06-04 02:02:20,336] [main] Total files: 7329 [testng] [2024-06-04 02:02:20,336] [main] Scan time: 441.593 s (60 ms/file) [testng] [2024-06-04 02:02:20,337] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-04 02:05:48,582] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:05:48,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:48,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-04_02-05-48.log] [testng] 02:05:48,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65d8743d - End of configuration. [testng] [2024-06-04 02:05:48,700] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-04 02:05:48,706] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:05:48,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:48,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:48,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-04_02-05-48.log] [testng] 02:05:48,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63cb586b - End of configuration. [testng] [2024-06-04 02:05:49,282] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:05:49,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:49,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-04_02-05-49.log] [testng] 02:05:49,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cfdd53d - End of configuration. [testng] [2024-06-04 02:05:49,378] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:05:49,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:49,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-04_02-05-49.log] [testng] 02:05:49,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29b4e28c - End of configuration. [testng] [2024-06-04 02:05:49,448] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:05:49,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:49,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-04_02-05-49.log] [testng] 02:05:49,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b09841a - End of configuration. [testng] [2024-06-04 02:05:49,503] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-04 02:05:49,506] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:05:49,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:49,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-04_02-05-49.log] [testng] 02:05:49,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a33381 - End of configuration. [testng] [2024-06-04 02:05:49,567] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:05:49,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:49,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-04_02-05-49.log] [testng] 02:05:49,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74b1207e - End of configuration. [testng] [2024-06-04 02:05:49,591] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:05:49,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:49,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-04_02-05-49.log] [testng] 02:05:49,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504077da - End of configuration. [testng] [2024-06-04 02:05:49,671] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:05:49,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:49,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-04_02-05-49.log] [testng] 02:05:49,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@789b277f - End of configuration. [testng] [2024-06-04 02:05:49,727] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-04 02:05:49,729] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:05:49,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:49,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-04_02-05-49.log] [testng] 02:05:49,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d106d4 - End of configuration. [testng] [2024-06-04 02:05:49,849] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:05:49,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:49,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-04_02-05-49.log] [testng] 02:05:49,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19db9257 - End of configuration. [testng] [2024-06-04 02:05:49,941] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:05:49,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:49,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:49,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-04_02-05-49.log] [testng] 02:05:49,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ea35a2 - End of configuration. [testng] [2024-06-04 02:05:51,779] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-04 02:05:52,282] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-04 02:05:52,465] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-04 02:05:52,717] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-04 02:05:52,829] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-04 02:05:52,878] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-04 02:05:52,975] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-04 02:05:53,126] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-04 02:05:53,698] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-04 02:05:54,259] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-04 02:05:54,403] [pool-1-thread-3] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-04 02:05:54,538] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-04 02:05:54,735] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-06-04 02:05:54,870] [pool-1-thread-5] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-04 02:05:55,046] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-04 02:05:55,063] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-04 02:05:55,064] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-04 02:05:55,234] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-04 02:05:55,343] [pool-1-thread-6] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-04 02:05:56,094] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-04 02:05:56,149] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-04 02:05:56,236] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-04 02:05:56,333] [pool-1-thread-3] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-04 02:05:56,429] [pool-1-thread-8] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-04 02:05:56,517] [pool-1-thread-1] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-04 02:05:59,290] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-04 02:05:59,355] [pool-1-thread-4] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-04 02:05:59,438] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-04 02:06:00,228] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2024-06-04 02:06:00,757] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-04 02:06:01,318] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-04 02:06:01,477] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-04 02:06:01,599] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-04 02:06:02,091] [pool-1-thread-10] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] 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Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-04 02:06:07,534] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-04 02:06:07,763] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-04 02:06:07,910] [pool-1-thread-3] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-04 02:06:08,041] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-04 02:06:08,464] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-04 02:06:09,147] [pool-1-thread-3] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-04 02:06:09,459] [pool-1-thread-11] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-04 02:06:10,153] [pool-1-thread-12] Initializing 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[pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-04 02:06:14,398] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-04 02:06:14,933] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-04 02:06:15,497] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-04 02:06:16,074] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-04 02:06:16,469] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-04 02:06:16,812] [pool-1-thread-5] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-04 02:06:19,230] [pool-1-thread-6] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-04 02:06:20,214] [pool-1-thread-1] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-04 02:06:21,118] 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02:06:34,962] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-04 02:06:35,734] [pool-1-thread-11] Initializing /data/josh/2101to600astk.stk: [testng] [2024-06-04 02:06:46,922] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-06-04 02:06:47,297] [pool-1-thread-2] Initializing /data/ascb/golgi marker.tif: [testng] [2024-06-04 02:06:47,411] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-06-04 02:06:47,503] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-04 02:06:48,280] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-06-04 02:06:51,434] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-04 02:06:52,308] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-04 02:06:52,706] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-04 02:06:53,131] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-04 02:06:53,449] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-04 02:06:54,103] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-04 02:06:56,058] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-04 02:06:56,613] [pool-1-thread-6] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-04 02:06:56,730] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-04 02:06:57,201] [pool-1-thread-9] Initializing 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[2024-06-04 02:07:03,791] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-06-04 02:07:03,925] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-04 02:07:05,742] [pool-1-thread-5] Initializing /data/josh/2101to800.stk: [testng] [2024-06-04 02:07:06,738] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-06-04 02:07:07,333] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-06-04 02:07:08,239] [pool-1-thread-6] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-06-04 02:07:09,188] [pool-1-thread-9] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-06-04 02:07:09,710] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-04 02:07:09,978] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-04 02:07:11,084] [pool-1-thread-9] Initializing /data/thomas/test.tif: [testng] [2024-06-04 02:07:11,182] [pool-1-thread-2] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-04 02:07:11,827] [pool-1-thread-6] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-04 02:07:13,672] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-04 02:07:14,024] [pool-1-thread-9] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-06-04 02:07:14,660] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-04 02:07:14,744] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-04 02:07:14,746] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-04 02:07:17,574] [pool-1-thread-10] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-06-04 02:07:17,910] [pool-1-thread-8] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-04 02:07:18,674] [pool-1-thread-3] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-04 02:07:19,341] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-04 02:07:20,840] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-04 02:07:21,118] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-04 02:07:21,917] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-04 02:07:23,608] [pool-1-thread-1] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-04 02:07:24,538] [pool-1-thread-3] Initializing /data/grant/X.STK: [testng] [2024-06-04 02:07:24,986] [pool-1-thread-12] Initializing 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/data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-04 02:07:28,891] [pool-1-thread-3] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-04 02:07:28,956] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-04 02:07:29,352] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-04 02:07:29,606] [pool-1-thread-3] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-04 02:07:29,872] [pool-1-thread-9] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-04 02:07:30,010] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-04 02:07:30,103] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-04 02:07:30,525] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-04 02:07:30,551] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-04 02:07:30,718] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-04 02:07:30,816] [pool-1-thread-8] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-04 02:07:31,427] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-04 02:07:31,508] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-04 02:07:32,209] [pool-1-thread-9] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-04 02:07:32,725] [pool-1-thread-3] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-04 02:07:40,012] [pool-1-thread-5] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-04 02:07:40,086] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-04 02:07:40,970] [pool-1-thread-1] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-04 02:07:41,150] [pool-1-thread-9] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-04 02:07:41,311] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-04 02:07:41,387] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-04 02:07:41,711] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-04 02:07:42,708] [pool-1-thread-5] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-04 02:07:42,828] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-04 02:07:43,284] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-04 02:07:44,422] [pool-1-thread-5] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-04 02:07:46,235] [pool-1-thread-12] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-04 02:07:46,397] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-04 02:07:46,834] [pool-1-thread-10] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-04 02:07:47,460] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-04 02:07:47,880] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-04 02:07:48,287] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-04 02:07:49,157] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-04 02:07:49,905] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-04 02:07:49,973] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-04 02:07:50,205] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-04 02:07:50,507] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-04 02:07:51,034] [pool-1-thread-10] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-04 02:07:53,044] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-04 02:07:53,254] [pool-1-thread-1] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-04 02:07:54,269] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-04 02:07:54,331] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-04 02:07:54,333] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-04 02:07:54,926] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-04 02:07:55,208] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-04 02:07:55,881] [pool-1-thread-2] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-04 02:07:55,957] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-04 02:07:56,232] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-04 02:07:56,875] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-04 02:07:57,126] [pool-1-thread-12] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-04 02:07:58,635] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-04 02:07:59,504] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-04 02:07:59,853] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-04 02:08:00,224] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-04 02:08:00,636] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-04 02:08:01,212] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-04 02:08:03,196] [pool-1-thread-1] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-04 02:08:03,585] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-04 02:08:03,838] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-04 02:08:03,939] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-04 02:08:04,040] [pool-1-thread-8] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 15 seconds Finished: SUCCESS