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Started by upstream project "BIOFORMATS-test-repo" build number 83 originally caused by: Started by upstream project "Trigger" build number 93 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9328077594564450874.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12652_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:29:31,351 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:29:31,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:29:31,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:31,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:31,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:29:31,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:29:31,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:29:31,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:31,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:31,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:29:31,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:29:31,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:29:31,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:29:31,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:29:31,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:29:31,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:29:31,613 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:29:31,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:29:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:29:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:29:31,615 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:29:31,615 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:29:31,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-05 01:29:31,625] [main] java.version = 17.0.2 [testng] 01:29:31,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:29:31,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:31,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-05_01-29-31.log] [testng] 01:29:31,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-05 01:29:31,675] [main] testng.directory = /data [testng] [2024-06-05 01:29:31,675] [main] testng.configDirectory = /config [testng] [2024-06-05 01:29:31,684] [main] testng.multiplier = 1.0 [testng] [2024-06-05 01:29:31,685] [main] testng.in-memory = false [testng] [2024-06-05 01:29:31,685] [main] testng.allow-missing = false [testng] [2024-06-05 01:29:31,685] [main] user.language = en [testng] [2024-06-05 01:29:31,685] [main] user.country = ${user.country} [testng] [2024-06-05 01:29:31,685] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-05 01:29:32,059] [main] ---------------------------------------- [testng] [2024-06-05 01:29:32,059] [main] Total files: 25 [testng] [2024-06-05 01:29:32,059] [main] Scan time: 0.374 s (14 ms/file) [testng] [2024-06-05 01:29:32,059] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-05 01:29:33,833] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:29:33,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:33,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:33,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-05_01-29-33.log] [testng] 01:29:33,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b06d22d - End of configuration. [testng] [2024-06-05 01:29:33,894] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] 01:29:33,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:33,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:33,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-05_01-29-33.log] [testng] 01:29:33,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53edc2c4 - End of configuration. [testng] [2024-06-05 01:29:33,942] [pool-1-thread-11] Initializing /data/jqd/32bit.pict: [testng] 01:29:33,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:33,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:33,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-05_01-29-33.log] [testng] 01:29:33,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a511d88 - End of configuration. [testng] [2024-06-05 01:29:33,991] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT: [testng] 01:29:33,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:33,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:33,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-05_01-29-33.log] [testng] 01:29:33,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31eb3162 - End of configuration. [testng] [2024-06-05 01:29:34,018] [pool-1-thread-9] Initializing /data/misc/planet.png: [testng] 01:29:34,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:34,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-05_01-29-34.log] [testng] 01:29:34,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51f1b290 - End of configuration. [testng] [2024-06-05 01:29:34,025] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 01:29:34,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:34,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-05_01-29-34.log] [testng] 01:29:34,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration. [testng] [2024-06-05 01:29:34,035] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:29:34,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:34,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-05_01-29-34.log] [testng] 01:29:34,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de033c5 - End of configuration. [testng] [2024-06-05 01:29:34,096] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:29:34,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:34,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-05_01-29-34.log] [testng] 01:29:34,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ce1dcf - End of configuration. [testng] [2024-06-05 01:29:34,110] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:29:34,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:34,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-05_01-29-34.log] [testng] 01:29:34,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55ebbee6 - End of configuration. [testng] [2024-06-05 01:29:34,120] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:29:34,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:34,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-05_01-29-34.log] [testng] 01:29:34,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfc6800 - End of configuration. [testng] [2024-06-05 01:29:34,316] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:29:34,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:34,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-05_01-29-34.log] [testng] 01:29:34,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331fd25 - End of configuration. [testng] [2024-06-05 01:29:34,338] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] 01:29:34,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:34,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:34,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-05_01-29-34.log] [testng] 01:29:34,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28197cb6 - End of configuration. [testng] [2024-06-05 01:29:35,903] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-06-05 01:29:35,919] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] [2024-06-05 01:29:35,940] [pool-1-thread-6] Initializing /data/brian/images/WHT.PCT: [testng] [2024-06-05 01:29:35,958] [pool-1-thread-3] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-06-05 01:29:36,116] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [2024-06-05 01:29:36,145] [pool-1-thread-9] Initializing /data/misc/swlogo.pict: [testng] [2024-06-05 01:29:36,378] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-06-05 01:29:36,547] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-06-05 01:29:36,568] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-06-05 01:29:36,587] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2024-06-05 01:29:36,693] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: [testng] [2024-06-05 01:29:36,709] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT: [testng] [2024-06-05 01:29:36,803] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS