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Started by upstream project "BIOFORMATS-test-repo" build number 83 originally caused by: Started by upstream project "Trigger" build number 93 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4172177392648276239.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12690_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:02:59,780 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:02:59,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:02:59,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:59,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:59,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:02:59,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:02:59,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:02:59,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:59,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:59,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:02:59,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:02:59,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:02:59,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:59,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:00,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:00,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:00,025 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:00,026 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:00,026 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:00,026 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:00,027 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:03:00,028 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:03:00,028 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-05 02:03:00,042] [main] java.version = 17.0.2 [testng] 02:03:00,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:00,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:00,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-05_02-03-00.log] [testng] 02:03:00,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-05 02:03:00,102] [main] testng.directory = /data [testng] [2024-06-05 02:03:00,103] [main] testng.configDirectory = /config [testng] [2024-06-05 02:03:00,113] [main] testng.multiplier = 1.0 [testng] [2024-06-05 02:03:00,113] [main] testng.in-memory = false [testng] [2024-06-05 02:03:00,114] [main] testng.allow-missing = false [testng] [2024-06-05 02:03:00,114] [main] user.language = en [testng] [2024-06-05 02:03:00,114] [main] user.country = ${user.country} [testng] [2024-06-05 02:03:00,114] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-05 02:03:10,115] [main] ---------------------------------------- [testng] [2024-06-05 02:03:10,115] [main] Total files: 268 [testng] [2024-06-05 02:03:10,115] [main] Scan time: 10.001 s (37 ms/file) [testng] [2024-06-05 02:03:10,115] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-05 02:03:22,340] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] 02:03:22,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:03:22,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-05_02-03-22.log] [testng] 02:03:22,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16e61efb - End of configuration. [testng] [2024-06-05 02:03:22,404] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:03:22,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:03:22,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-05_02-03-22.log] [testng] 02:03:22,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18e618ae - End of configuration. [testng] [2024-06-05 02:03:22,417] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 02:03:22,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:03:22,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-05_02-03-22.log] [testng] 02:03:22,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c852bd7 - End of configuration. [testng] [2024-06-05 02:03:22,447] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] 02:03:22,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:03:22,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-05_02-03-22.log] [testng] 02:03:22,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486e00c2 - End of configuration. [testng] [2024-06-05 02:03:22,487] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] 02:03:22,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:03:22,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-05_02-03-22.log] [testng] 02:03:22,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e203ee - End of configuration. [testng] [2024-06-05 02:03:22,504] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 02:03:22,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:03:22,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-05_02-03-22.log] [testng] 02:03:22,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4164d7a - End of configuration. [testng] [2024-06-05 02:03:22,528] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA: [testng] 02:03:22,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:03:22,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-05_02-03-22.log] [testng] 02:03:22,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c950a8 - End of configuration. [testng] [2024-06-05 02:03:22,553] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] 02:03:22,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:03:22,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-05_02-03-22.log] [testng] 02:03:22,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@300b47d3 - End of configuration. [testng] [2024-06-05 02:03:22,579] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] 02:03:22,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:03:22,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-05_02-03-22.log] [testng] 02:03:22,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@293df16 - End of configuration. [testng] [2024-06-05 02:03:22,718] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] 02:03:22,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:03:22,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-05_02-03-22.log] [testng] 02:03:22,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a35507 - End of configuration. [testng] [2024-06-05 02:03:22,735] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 02:03:22,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:03:22,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-05_02-03-22.log] [testng] 02:03:22,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@271272da - End of configuration. [testng] [2024-06-05 02:03:22,772] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:03:22,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:03:22,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:22,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-05_02-03-22.log] [testng] 02:03:22,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a52cb7 - End of configuration. [testng] [2024-06-05 02:03:24,665] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-06-05 02:03:24,705] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-06-05 02:03:24,747] [pool-1-thread-2] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-06-05 02:03:24,785] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-06-05 02:03:24,844] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-06-05 02:03:24,858] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-06-05 02:03:24,894] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-06-05 02:03:24,923] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-06-05 02:03:24,933] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-06-05 02:03:24,945] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-06-05 02:03:24,993] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-06-05 02:03:25,371] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-06-05 02:03:25,509] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-06-05 02:03:25,590] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-06-05 02:03:25,724] [pool-1-thread-7] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-06-05 02:03:25,741] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-06-05 02:03:25,800] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-06-05 02:03:25,915] [pool-1-thread-9] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-06-05 02:03:25,952] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-06-05 02:03:25,984] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-06-05 02:03:26,032] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-06-05 02:03:26,084] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-06-05 02:03:26,129] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-06-05 02:03:26,455] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-06-05 02:03:26,503] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-06-05 02:03:26,520] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-06-05 02:03:26,570] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-06-05 02:03:26,608] [pool-1-thread-12] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-06-05 02:03:26,724] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-06-05 02:03:26,740] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-06-05 02:03:26,788] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-06-05 02:03:26,852] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-06-05 02:03:26,919] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-06-05 02:03:27,003] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-06-05 02:03:27,019] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-06-05 02:03:27,106] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-06-05 02:03:27,279] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-06-05 02:03:27,291] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-06-05 02:03:27,384] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-06-05 02:03:27,411] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-06-05 02:03:27,433] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-06-05 02:03:27,582] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-06-05 02:03:27,632] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-06-05 02:03:27,747] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-06-05 02:03:27,846] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-06-05 02:03:27,878] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-06-05 02:03:27,912] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-06-05 02:03:27,996] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-06-05 02:03:28,045] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-06-05 02:03:28,099] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-06-05 02:03:28,241] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-06-05 02:03:28,278] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] [2024-06-05 02:03:28,342] [pool-1-thread-11] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-06-05 02:03:28,421] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-06-05 02:03:28,471] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-06-05 02:03:28,505] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-06-05 02:03:28,553] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-06-05 02:03:28,595] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-06-05 02:03:28,645] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-06-05 02:03:28,764] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-06-05 02:03:28,815] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-06-05 02:03:28,879] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-06-05 02:03:28,900] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-06-05 02:03:28,948] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-06-05 02:03:29,038] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-06-05 02:03:29,144] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-06-05 02:03:29,181] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-06-05 02:03:29,263] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-06-05 02:03:29,543] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-06-05 02:03:29,552] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-06-05 02:03:29,569] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-06-05 02:03:29,610] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-06-05 02:03:29,650] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-06-05 02:03:29,679] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-06-05 02:03:29,725] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-06-05 02:03:29,831] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-06-05 02:03:29,884] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-06-05 02:03:29,899] [pool-1-thread-2] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-06-05 02:03:29,920] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-06-05 02:03:29,949] [pool-1-thread-1] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-06-05 02:03:29,977] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-06-05 02:03:30,055] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-06-05 02:03:30,179] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-06-05 02:03:30,310] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-06-05 02:03:30,328] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-06-05 02:03:30,341] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-06-05 02:03:30,366] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-06-05 02:03:30,409] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-06-05 02:03:30,453] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-06-05 02:03:30,566] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-06-05 02:03:30,690] [pool-1-thread-4] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-06-05 02:03:30,805] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-06-05 02:03:30,821] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-06-05 02:03:30,864] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-06-05 02:03:30,885] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-06-05 02:03:30,951] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-06-05 02:03:30,996] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-06-05 02:03:31,053] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-06-05 02:03:31,101] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-06-05 02:03:31,219] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-06-05 02:03:31,236] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-06-05 02:03:31,347] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-06-05 02:03:31,407] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-06-05 02:03:31,495] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-06-05 02:03:31,516] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-06-05 02:03:31,526] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-06-05 02:03:31,604] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-06-05 02:03:31,627] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-06-05 02:03:31,704] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-06-05 02:03:31,717] [pool-1-thread-3] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-06-05 02:03:31,742] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-06-05 02:03:31,853] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-06-05 02:03:31,883] [pool-1-thread-1] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-06-05 02:03:31,943] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-06-05 02:03:32,021] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-06-05 02:03:32,058] [pool-1-thread-10] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-06-05 02:03:32,124] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-06-05 02:03:32,136] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-06-05 02:03:32,146] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-06-05 02:03:32,413] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-06-05 02:03:32,453] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-06-05 02:03:32,476] [pool-1-thread-6] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-06-05 02:03:32,516] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-06-05 02:03:32,545] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-06-05 02:03:32,577] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-06-05 02:03:32,610] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-06-05 02:03:32,737] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-06-05 02:03:32,859] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-06-05 02:03:32,907] [pool-1-thread-10] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-06-05 02:03:32,941] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-06-05 02:03:32,964] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-06-05 02:03:32,994] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-06-05 02:03:33,219] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-06-05 02:03:33,238] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-06-05 02:03:33,246] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-06-05 02:03:33,385] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-06-05 02:03:33,415] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-06-05 02:03:33,481] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-06-05 02:03:33,551] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-06-05 02:03:33,567] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-06-05 02:03:33,590] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-06-05 02:03:33,598] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-06-05 02:03:33,674] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-06-05 02:03:33,739] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-06-05 02:03:33,785] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits: [testng] [2024-06-05 02:03:33,790] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-06-05 02:03:33,846] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-06-05 02:03:33,890] [pool-1-thread-10] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS