![[Jenkins]](/jenkins/static/0ce0ee70/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 83 originally caused by: Started by upstream project "Trigger" build number 93 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14064130902521041888.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12757_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:41:57,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:41:57,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:41:57,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:41:57,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:41:57,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:41:57,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:41:57,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:41:57,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:41:57,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:41:57,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:41:57,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:41:57,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:41:57,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:41:57,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:41:57,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:41:57,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:41:57,253 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:41:57,253 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:41:57,253 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:41:57,253 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:41:57,253 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:41:57,254 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:41:57,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-05 02:41:57,263] [main] java.version = 17.0.2 [testng] 02:41:57,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:57,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:57,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-05_02-41-57.log] [testng] 02:41:57,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-05 02:41:57,312] [main] testng.directory = /data [testng] [2024-06-05 02:41:57,312] [main] testng.configDirectory = /config [testng] [2024-06-05 02:41:57,321] [main] testng.multiplier = 1.0 [testng] [2024-06-05 02:41:57,322] [main] testng.in-memory = false [testng] [2024-06-05 02:41:57,322] [main] testng.allow-missing = false [testng] [2024-06-05 02:41:57,322] [main] user.language = en [testng] [2024-06-05 02:41:57,322] [main] user.country = ${user.country} [testng] [2024-06-05 02:41:57,322] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-05 02:41:59,363] [main] ---------------------------------------- [testng] [2024-06-05 02:41:59,363] [main] Total files: 31 [testng] [2024-06-05 02:41:59,363] [main] Scan time: 2.041 s (65 ms/file) [testng] [2024-06-05 02:41:59,363] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-05 02:42:02,755] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] 02:42:02,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:42:02,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:02,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-05_02-42-02.log] [testng] 02:42:02,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ce6cc43 - End of configuration. [testng] [2024-06-05 02:42:02,819] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: [testng] 02:42:02,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:42:02,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:02,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-05_02-42-02.log] [testng] 02:42:02,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323a81ca - End of configuration. [testng] [2024-06-05 02:42:02,871] [pool-1-thread-11] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 02:42:02,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:42:02,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:02,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-05_02-42-02.log] [testng] 02:42:02,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@582e7b1e - End of configuration. [testng] [2024-06-05 02:42:02,897] [pool-1-thread-10] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 02:42:02,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:42:02,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:02,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-05_02-42-02.log] [testng] 02:42:02,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3be1f902 - End of configuration. [testng] [2024-06-05 02:42:02,986] [pool-1-thread-9] Initializing /data/david/multichannel-2d test.jp2: [testng] 02:42:02,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:42:02,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:02,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-05_02-42-02.log] [testng] 02:42:02,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@600a5827 - End of configuration. [testng] [2024-06-05 02:42:03,017] [pool-1-thread-8] Initializing /data/big-images/2kx2k.jpf: [testng] 02:42:03,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:42:03,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-05_02-42-03.log] [testng] 02:42:03,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fad94aa - End of configuration. [testng] [2024-06-05 02:42:03,052] [pool-1-thread-7] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 02:42:03,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:42:03,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-05_02-42-03.log] [testng] 02:42:03,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58878737 - End of configuration. [testng] [2024-06-05 02:42:03,086] [pool-1-thread-6] Initializing /data/kraig/head.jp2: [testng] 02:42:03,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:42:03,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-05_02-42-03.log] [testng] 02:42:03,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8cad72a - End of configuration. [testng] [2024-06-05 02:42:03,145] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 02:42:03,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:42:03,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-05_02-42-03.log] [testng] 02:42:03,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78efa48c - End of configuration. [testng] [2024-06-05 02:42:03,359] [pool-1-thread-4] Initializing /data/vikram/Captured 5.jp2: [testng] 02:42:03,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:42:03,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-05_02-42-03.log] [testng] 02:42:03,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2359a202 - End of configuration. [testng] [2024-06-05 02:42:03,425] [pool-1-thread-3] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 02:42:03,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:42:03,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-05_02-42-03.log] [testng] 02:42:03,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11eebadc - End of configuration. [testng] [2024-06-05 02:42:03,805] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: [testng] 02:42:03,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:42:03,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:03,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-05_02-42-03.log] [testng] 02:42:03,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@efc4cde - End of configuration. [testng] [2024-06-05 02:42:06,286] [pool-1-thread-12] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-06-05 02:42:06,369] [pool-1-thread-4] Initializing /data/frans/flower.jp2: [testng] [2024-06-05 02:42:06,386] [pool-1-thread-6] Initializing /data/david/000000_000001.jpx: [testng] [2024-06-05 02:42:06,441] [pool-1-thread-2] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-06-05 02:42:06,553] [pool-1-thread-1] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-06-05 02:42:11,342] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-06-05 02:42:12,197] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-06-05 02:42:13,261] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] [2024-06-05 02:42:13,947] [pool-1-thread-6] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-06-05 02:42:14,759] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-06-05 02:42:15,620] [pool-1-thread-8] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-06-05 02:42:16,671] [pool-1-thread-8] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-06-05 02:42:17,157] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-06-05 02:42:18,578] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-06-05 02:42:19,314] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-06-05 02:42:20,019] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-06-05 02:42:20,372] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-06-05 02:42:20,404] [pool-1-thread-12] Initializing /data/aryeh/flour 12.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 34 seconds Finished: SUCCESS