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Started by upstream project "BIOFORMATS-test-repo" build number 83 originally caused by: Started by upstream project "Trigger" build number 93 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14044641404362178446.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12759_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:44:25,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:44:25,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:44:25,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:25,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:25,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:44:25,165 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:44:25,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:44:25,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:25,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:25,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:44:25,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:44:25,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:44:25,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:44:25,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:44:25,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:44:25,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:44:25,435 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:44:25,435 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:44:25,436 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:44:25,436 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:44:25,436 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:44:25,437 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:44:25,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 271 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-05 02:44:25,448] [main] java.version = 17.0.2 [testng] 02:44:25,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:44:25,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:25,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-05_02-44-25.log] [testng] 02:44:25,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-05 02:44:25,504] [main] testng.directory = /data [testng] [2024-06-05 02:44:25,505] [main] testng.configDirectory = /config [testng] [2024-06-05 02:44:25,515] [main] testng.multiplier = 1.0 [testng] [2024-06-05 02:44:25,516] [main] testng.in-memory = false [testng] [2024-06-05 02:44:25,517] [main] testng.allow-missing = false [testng] [2024-06-05 02:44:25,517] [main] user.language = en [testng] [2024-06-05 02:44:25,517] [main] user.country = ${user.country} [testng] [2024-06-05 02:44:25,517] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-05 02:44:26,698] [main] ---------------------------------------- [testng] [2024-06-05 02:44:26,698] [main] Total files: 22 [testng] [2024-06-05 02:44:26,698] [main] Scan time: 1.181 s (53 ms/file) [testng] [2024-06-05 02:44:26,698] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-05 02:44:34,578] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif: [testng] 02:44:34,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:44:34,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-05_02-44-34.log] [testng] 02:44:34,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bdc3e0 - End of configuration. [testng] [2024-06-05 02:44:34,758] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: [testng] 02:44:34,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:44:34,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-05_02-44-34.log] [testng] 02:44:34,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad238b1 - End of configuration. [testng] [2024-06-05 02:44:34,795] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:44:34,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:44:34,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-05_02-44-34.log] [testng] 02:44:34,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ba7317 - End of configuration. [testng] [2024-06-05 02:44:34,831] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq: [testng] 02:44:34,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:44:34,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-05_02-44-34.log] [testng] 02:44:34,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f33869 - End of configuration. [testng] [2024-06-05 02:44:34,927] [pool-1-thread-9] Initializing /data/converted/dub01.ipw: [testng] 02:44:34,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:44:34,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-05_02-44-34.log] [testng] 02:44:34,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10741275 - End of configuration. [testng] [2024-06-05 02:44:34,961] [pool-1-thread-8] Initializing /data/converted/clown.ipw: [testng] 02:44:34,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:44:34,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-05_02-44-34.log] [testng] 02:44:34,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eb0c2da - End of configuration. [testng] [2024-06-05 02:44:34,980] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:44:34,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:44:34,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:34,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-05_02-44-34.log] [testng] 02:44:34,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78ec7cc2 - End of configuration. [testng] [2024-06-05 02:44:35,012] [pool-1-thread-6] Initializing /data/converted/clown8c.seq: [testng] 02:44:35,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:44:35,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:35,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-05_02-44-35.log] [testng] 02:44:35,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38105904 - End of configuration. [testng] [2024-06-05 02:44:35,029] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw: [testng] 02:44:35,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:44:35,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:35,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-05_02-44-35.log] [testng] 02:44:35,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@243e9552 - End of configuration. [testng] [2024-06-05 02:44:35,066] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 02:44:35,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:44:35,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:35,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-05_02-44-35.log] [testng] 02:44:35,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d9392d - End of configuration. [testng] [2024-06-05 02:44:35,083] [pool-1-thread-3] Initializing /data/converted/clown.seq: [testng] 02:44:35,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:44:35,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:35,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-05_02-44-35.log] [testng] 02:44:35,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@644add94 - End of configuration. [testng] [2024-06-05 02:44:35,098] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: [testng] 02:44:35,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:44:35,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:35,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-05_02-44-35.log] [testng] 02:44:35,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eb955da - End of configuration. [testng] [2024-06-05 02:44:37,291] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] [2024-06-05 02:44:37,317] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ: [testng] [2024-06-05 02:44:37,354] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-06-05 02:44:37,429] [pool-1-thread-8] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-06-05 02:44:37,473] [pool-1-thread-9] Initializing /data/samples/PROBE.TIF: [testng] [2024-06-05 02:44:37,490] [pool-1-thread-12] Initializing /data/converted/dub01.pic: [testng] [2024-06-05 02:44:37,518] [pool-1-thread-7] Initializing /data/converted/clown8c.ipw: [testng] [2024-06-05 02:44:37,533] [pool-1-thread-11] Initializing /data/alex/AFAset0003.ips: [testng] [2024-06-05 02:44:37,544] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 seconds Finished: SUCCESS