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Started by upstream project "BIOFORMATS-test-repo" build number 84 originally caused by: Started by upstream project "Trigger" build number 95 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins721106368991854509.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12780_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:56:26,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:56:26,701 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 08:56:26,701 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:56:26,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:56:26,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:56:26,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:56:26,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:56:26,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:56:26,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:56:26,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:56:26,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:56:26,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:56:26,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:56:26,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:56:26,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:56:26,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:56:26,918 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:56:26,918 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:56:26,919 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:56:26,919 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:56:26,919 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 08:56:26,920 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 08:56:26,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-06 08:56:26,931] [main] java.version = 21 [testng] 08:56:26,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:56:26,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:26,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-06_08-56-26.log] [testng] 08:56:26,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-06 08:56:26,982] [main] testng.directory = /data [testng] [2024-06-06 08:56:26,983] [main] testng.configDirectory = /config [testng] [2024-06-06 08:56:26,992] [main] testng.multiplier = 1.0 [testng] [2024-06-06 08:56:26,993] [main] testng.in-memory = false [testng] [2024-06-06 08:56:26,993] [main] testng.allow-missing = false [testng] [2024-06-06 08:56:26,993] [main] user.language = en [testng] [2024-06-06 08:56:26,993] [main] user.country = ${user.country} [testng] [2024-06-06 08:56:26,993] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-06 08:56:27,394] [main] ---------------------------------------- [testng] [2024-06-06 08:56:27,394] [main] Total files: 21 [testng] [2024-06-06 08:56:27,394] [main] Scan time: 0.401 s (19 ms/file) [testng] [2024-06-06 08:56:27,395] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-06 08:56:28,711] [pool-1-thread-1] Initializing /data/venu/Kontrolle0019.lim: [testng] 08:56:28,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:56:28,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-06_08-56-28.log] [testng] 08:56:28,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cdc071a - End of configuration. [testng] [2024-06-06 08:56:28,743] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim: [testng] 08:56:28,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:56:28,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-06_08-56-28.log] [testng] 08:56:28,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@210e617c - End of configuration. [testng] [2024-06-06 08:56:28,762] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim: [testng] 08:56:28,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:56:28,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-06_08-56-28.log] [testng] 08:56:28,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a85e9c6 - End of configuration. [testng] [2024-06-06 08:56:28,791] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim: [testng] 08:56:28,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:56:28,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-06_08-56-28.log] [testng] 08:56:28,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a40abe - End of configuration. [testng] [2024-06-06 08:56:28,820] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim: [testng] 08:56:28,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:56:28,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-06_08-56-28.log] [testng] 08:56:28,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46fc7e9f - End of configuration. [testng] [2024-06-06 08:56:28,849] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] 08:56:28,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:56:28,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-06_08-56-28.log] [testng] 08:56:28,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3129d52 - End of configuration. [testng] [2024-06-06 08:56:28,873] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] 08:56:28,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:56:28,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-06_08-56-28.log] [testng] 08:56:28,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d90c5df - End of configuration. [testng] [2024-06-06 08:56:28,897] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim: [testng] 08:56:28,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:56:28,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-06_08-56-28.log] [testng] 08:56:28,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77c93103 - End of configuration. [testng] [2024-06-06 08:56:28,928] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 08:56:28,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:56:28,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-06_08-56-28.log] [testng] 08:56:28,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration. [testng] [2024-06-06 08:56:28,951] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim: [testng] 08:56:28,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:56:28,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-06_08-56-28.log] [testng] 08:56:28,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1159b04 - End of configuration. [testng] [2024-06-06 08:56:28,967] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim: [testng] 08:56:28,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:56:28,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-06_08-56-28.log] [testng] 08:56:28,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25329239 - End of configuration. [testng] [2024-06-06 08:56:28,982] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 08:56:28,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:56:28,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-06_08-56-28.log] [testng] 08:56:28,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63047687 - End of configuration. [testng] [2024-06-06 08:56:31,901] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-06-06 08:56:31,914] [pool-1-thread-2] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-06-06 08:56:31,930] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-06-06 08:56:31,945] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-06-06 08:56:31,958] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-06-06 08:56:31,981] [pool-1-thread-9] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-06-06 08:56:31,997] [pool-1-thread-1] Initializing /data/venu/Kontrolle0012.lim: [testng] [2024-06-06 08:56:32,014] [pool-1-thread-11] Initializing /data/venu/Kontrolle0009.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS