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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16720039614806823645.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12956_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:10,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:10,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:10,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:10,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:10,687 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:10,687 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:10,687 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:10,688 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:10,688 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:25:10,689 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:25:10,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 728 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 01:25:10,699] [main] java.version = 1.8.0_342 [testng] 01:25:10,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:10,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:10,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_01-25-10.log] [testng] 01:25:10,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 01:25:10,784] [main] testng.directory = /data [testng] [2024-06-07 01:25:10,784] [main] testng.configDirectory = /config [testng] [2024-06-07 01:25:10,801] [main] testng.multiplier = 1.0 [testng] [2024-06-07 01:25:10,801] [main] testng.in-memory = false [testng] [2024-06-07 01:25:10,801] [main] testng.allow-missing = false [testng] [2024-06-07 01:25:10,801] [main] user.language = en [testng] [2024-06-07 01:25:10,801] [main] user.country = ${user.country} [testng] [2024-06-07 01:25:10,801] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 01:25:23,149] [main] ---------------------------------------- [testng] [2024-06-07 01:25:23,149] [main] Total files: 226 [testng] [2024-06-07 01:25:23,150] [main] Scan time: 12.347 s (54 ms/file) [testng] [2024-06-07 01:25:23,150] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 01:25:30,959] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:25:30,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:30,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:30,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_01-25-30.log] [testng] 01:25:30,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a26d591 - End of configuration. [testng] [2024-06-07 01:25:31,017] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:25:31,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:31,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_01-25-31.log] [testng] 01:25:31,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f931b4 - End of configuration. [testng] [2024-06-07 01:25:31,034] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:25:31,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:31,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_01-25-31.log] [testng] 01:25:31,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656f1568 - End of configuration. [testng] [2024-06-07 01:25:31,050] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:25:31,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:31,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_01-25-31.log] [testng] 01:25:31,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e21a2f3 - End of configuration. [testng] [2024-06-07 01:25:31,058] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:25:31,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:31,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_01-25-31.log] [testng] 01:25:31,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d7fdd8d - End of configuration. [testng] [2024-06-07 01:25:31,097] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:25:31,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:31,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_01-25-31.log] [testng] 01:25:31,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41178ab4 - End of configuration. [testng] [2024-06-07 01:25:31,136] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:25:31,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:31,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_01-25-31.log] [testng] 01:25:31,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ba318f8 - End of configuration. [testng] [2024-06-07 01:25:31,167] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:25:31,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:31,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_01-25-31.log] [testng] 01:25:31,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@158d6fba - End of configuration. [testng] [2024-06-07 01:25:31,177] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:25:31,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:31,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_01-25-31.log] [testng] 01:25:31,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447910ab - End of configuration. [testng] [2024-06-07 01:25:31,271] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:25:31,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:31,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_01-25-31.log] [testng] 01:25:31,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7696cc70 - End of configuration. [testng] [2024-06-07 01:25:31,282] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:25:31,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:31,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_01-25-31.log] [testng] 01:25:31,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c736e29 - End of configuration. [testng] [2024-06-07 01:25:31,292] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:25:31,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:31,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:31,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_01-25-31.log] [testng] 01:25:31,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48cb6cd5 - End of configuration. [testng] [2024-06-07 01:25:33,252] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-06-07 01:25:33,285] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-06-07 01:25:33,300] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-06-07 01:25:33,312] [pool-1-thread-10] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-06-07 01:25:33,352] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-06-07 01:25:33,495] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-06-07 01:25:33,505] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-06-07 01:25:33,515] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-06-07 01:25:33,531] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-06-07 01:25:33,543] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-06-07 01:25:34,103] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-06-07 01:25:34,173] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-06-07 01:25:34,233] [pool-1-thread-12] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-06-07 01:25:34,280] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-06-07 01:25:34,349] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-06-07 01:25:34,561] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS