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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins2683987238003380025.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13018_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:10:34,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:10:34,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:10:34,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:10:34,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:10:34,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:10:34,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:10:34,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:10:34,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:10:34,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:10:34,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:10:34,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:10:34,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:10:34,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:10:34,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:10:34,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:10:34,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:10:34,720 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:10:34,721 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:10:34,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:10:34,722 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:10:34,722 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:10:34,723 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:10:34,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 365 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 02:10:34,748] [main] java.version = 1.8.0_342 [testng] 02:10:34,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:10:34,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:34,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-10-34.log] [testng] 02:10:34,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 02:10:34,870] [main] testng.directory = /data [testng] [2024-06-07 02:10:34,870] [main] testng.configDirectory = /config [testng] [2024-06-07 02:10:34,933] [main] testng.multiplier = 1.0 [testng] [2024-06-07 02:10:34,933] [main] testng.in-memory = false [testng] [2024-06-07 02:10:34,933] [main] testng.allow-missing = false [testng] [2024-06-07 02:10:34,933] [main] user.language = en [testng] [2024-06-07 02:10:34,933] [main] user.country = ${user.country} [testng] [2024-06-07 02:10:34,933] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 02:10:43,064] [main] ---------------------------------------- [testng] [2024-06-07 02:10:43,064] [main] Total files: 268 [testng] [2024-06-07 02:10:43,065] [main] Scan time: 8.13 s (30 ms/file) [testng] [2024-06-07 02:10:43,065] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 02:10:55,859] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 02:10:55,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:10:55,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:55,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-10-55.log] [testng] 02:10:55,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411c907 - End of configuration. [testng] [2024-06-07 02:10:55,898] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] 02:10:55,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:10:55,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:55,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-10-55.log] [testng] 02:10:55,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@288ff06f - End of configuration. [testng] [2024-06-07 02:10:55,966] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA: [testng] 02:10:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:10:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:55,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-10-55.log] [testng] 02:10:55,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ecca274 - End of configuration. [testng] [2024-06-07 02:10:55,989] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:10:55,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:10:55,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:55,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-10-55.log] [testng] 02:10:55,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5374caab - End of configuration. [testng] [2024-06-07 02:10:56,012] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] 02:10:56,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:10:56,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-10-56.log] [testng] 02:10:56,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eb8bfbf - End of configuration. [testng] [2024-06-07 02:10:56,037] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] 02:10:56,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:10:56,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-10-56.log] [testng] 02:10:56,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7683d1d9 - End of configuration. [testng] [2024-06-07 02:10:56,092] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 02:10:56,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:10:56,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-10-56.log] [testng] 02:10:56,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fd31940 - End of configuration. [testng] [2024-06-07 02:10:56,146] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] 02:10:56,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:10:56,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-10-56.log] [testng] 02:10:56,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@208db5f5 - End of configuration. [testng] [2024-06-07 02:10:56,167] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits: [testng] 02:10:56,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:10:56,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-10-56.log] [testng] 02:10:56,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc7e266 - End of configuration. [testng] [2024-06-07 02:10:56,185] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 02:10:56,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:10:56,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-10-56.log] [testng] 02:10:56,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fa0b797 - End of configuration. [testng] [2024-06-07 02:10:56,205] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] 02:10:56,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:10:56,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-10-56.log] [testng] 02:10:56,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74ef5b3 - End of configuration. [testng] [2024-06-07 02:10:56,211] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] 02:10:56,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:10:56,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:56,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-10-56.log] [testng] 02:10:56,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@283bc165 - End of configuration. [testng] [2024-06-07 02:10:58,007] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-06-07 02:10:58,033] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-06-07 02:10:58,092] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-06-07 02:10:58,269] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-06-07 02:10:58,289] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-06-07 02:10:58,331] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-06-07 02:10:58,354] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-06-07 02:10:58,369] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-06-07 02:10:58,403] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-06-07 02:10:58,433] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-06-07 02:10:58,461] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-06-07 02:10:58,823] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-06-07 02:10:58,944] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-06-07 02:10:58,980] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-06-07 02:10:59,046] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-06-07 02:10:59,111] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-06-07 02:10:59,128] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-06-07 02:10:59,154] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-06-07 02:10:59,330] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-06-07 02:10:59,417] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-06-07 02:10:59,447] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-06-07 02:10:59,597] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-06-07 02:10:59,609] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-06-07 02:10:59,680] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-06-07 02:10:59,747] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-06-07 02:10:59,806] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-06-07 02:10:59,865] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-06-07 02:10:59,932] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-06-07 02:11:00,044] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-06-07 02:11:00,068] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-06-07 02:11:00,105] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-06-07 02:11:00,205] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-06-07 02:11:00,231] [pool-1-thread-2] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-06-07 02:11:00,355] [pool-1-thread-6] Initializing /data/steve/FITS/M13.fits: [testng] [2024-06-07 02:11:00,359] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-06-07 02:11:00,400] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-06-07 02:11:00,480] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-06-07 02:11:00,546] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-06-07 02:11:00,583] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-06-07 02:11:00,678] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-06-07 02:11:00,703] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-06-07 02:11:00,743] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-06-07 02:11:00,757] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-06-07 02:11:00,775] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-06-07 02:11:00,797] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-06-07 02:11:00,802] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-06-07 02:11:00,928] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-06-07 02:11:00,992] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-06-07 02:11:01,115] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-06-07 02:11:01,153] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-06-07 02:11:01,171] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-06-07 02:11:01,192] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-06-07 02:11:01,269] [pool-1-thread-6] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-06-07 02:11:01,288] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-06-07 02:11:01,375] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-06-07 02:11:01,397] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-06-07 02:11:01,416] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-06-07 02:11:01,456] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-06-07 02:11:01,589] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-06-07 02:11:01,642] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-06-07 02:11:01,689] [pool-1-thread-2] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-06-07 02:11:01,744] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-06-07 02:11:01,825] [pool-1-thread-10] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-06-07 02:11:01,907] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-06-07 02:11:01,945] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-06-07 02:11:01,989] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-06-07 02:11:02,038] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-06-07 02:11:02,076] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-06-07 02:11:02,164] [pool-1-thread-6] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-06-07 02:11:02,195] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-06-07 02:11:02,261] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-06-07 02:11:02,300] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-06-07 02:11:02,343] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-06-07 02:11:02,353] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-06-07 02:11:02,370] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-06-07 02:11:02,391] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-06-07 02:11:02,422] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-06-07 02:11:02,457] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-06-07 02:11:02,498] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-06-07 02:11:02,532] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-06-07 02:11:02,604] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-06-07 02:11:02,643] [pool-1-thread-6] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-06-07 02:11:02,663] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-06-07 02:11:02,696] [pool-1-thread-3] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-06-07 02:11:02,756] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-06-07 02:11:02,807] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-06-07 02:11:02,837] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-06-07 02:11:02,914] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-06-07 02:11:02,994] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-06-07 02:11:03,016] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-06-07 02:11:03,170] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-06-07 02:11:03,239] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-06-07 02:11:03,309] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-06-07 02:11:03,361] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-06-07 02:11:03,500] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-06-07 02:11:03,521] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-06-07 02:11:03,566] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-06-07 02:11:03,600] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-06-07 02:11:03,709] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-06-07 02:11:03,766] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-06-07 02:11:03,953] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-06-07 02:11:03,974] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-06-07 02:11:04,074] [pool-1-thread-4] Initializing /data/steve/FITS/M104.fits: [testng] [2024-06-07 02:11:04,130] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-06-07 02:11:04,159] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-06-07 02:11:04,195] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-06-07 02:11:04,228] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-06-07 02:11:04,262] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-06-07 02:11:04,319] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-06-07 02:11:04,344] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-06-07 02:11:04,418] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-06-07 02:11:04,490] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-06-07 02:11:04,504] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-06-07 02:11:04,548] [pool-1-thread-2] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-06-07 02:11:04,563] [pool-1-thread-7] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-06-07 02:11:04,664] [pool-1-thread-11] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-06-07 02:11:04,791] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-06-07 02:11:04,891] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-06-07 02:11:04,902] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-06-07 02:11:04,930] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-06-07 02:11:05,026] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-06-07 02:11:05,053] [pool-1-thread-4] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-06-07 02:11:05,163] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-06-07 02:11:05,237] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-06-07 02:11:05,280] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-06-07 02:11:05,310] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-06-07 02:11:05,339] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-06-07 02:11:05,454] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-06-07 02:11:05,487] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-06-07 02:11:05,523] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-06-07 02:11:05,563] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-06-07 02:11:05,677] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-06-07 02:11:05,758] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-06-07 02:11:05,772] [pool-1-thread-8] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-06-07 02:11:05,824] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-06-07 02:11:05,871] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-06-07 02:11:05,891] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-06-07 02:11:05,920] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-06-07 02:11:05,964] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-06-07 02:11:06,005] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-06-07 02:11:06,041] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-06-07 02:11:06,098] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-06-07 02:11:06,139] [pool-1-thread-4] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-06-07 02:11:06,211] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-06-07 02:11:06,278] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-06-07 02:11:06,319] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-06-07 02:11:06,391] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-06-07 02:11:06,415] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 38 seconds Finished: SUCCESS