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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10399797592588643469.sh + '[' noaa-hrd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13039_merge_ci -v /uod/idr/repos/curated/noaa-hrd:/data -v /uod/idr-scratch/merge-ci/curated/noaa-hrd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:18:29,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:30,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:30,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:30,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:30,142 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:30,143 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:30,143 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:30,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:30,144 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:18:30,146 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:18:30,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 599 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 02:18:30,164] [main] java.version = 1.8.0_342 [testng] 02:18:30,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:30,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:30,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-18-30.log] [testng] 02:18:30,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 02:18:30,236] [main] testng.directory = /data [testng] [2024-06-07 02:18:30,237] [main] testng.configDirectory = /config [testng] [2024-06-07 02:18:30,256] [main] testng.multiplier = 1.0 [testng] [2024-06-07 02:18:30,257] [main] testng.in-memory = false [testng] [2024-06-07 02:18:30,257] [main] testng.allow-missing = false [testng] [2024-06-07 02:18:30,257] [main] user.language = en [testng] [2024-06-07 02:18:30,257] [main] user.country = ${user.country} [testng] [2024-06-07 02:18:30,257] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 02:18:32,658] [main] ---------------------------------------- [testng] [2024-06-07 02:18:32,659] [main] Total files: 9 [testng] [2024-06-07 02:18:32,659] [main] Scan time: 2.401 s (266 ms/file) [testng] [2024-06-07 02:18:32,659] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 9 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 02:18:34,850] [pool-1-thread-1] Initializing /data/andrew/AL021992_0824_0900: [testng] 02:18:34,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:34,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:34,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-18-34.log] [testng] 02:18:34,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1edf9090 - End of configuration. [testng] [2024-06-07 02:18:35,080] [pool-1-thread-9] Initializing /data/andrew/AL021992_0824_1502marine: [testng] 02:18:35,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:35,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:35,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-18-35.log] [testng] 02:18:35,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65990ad4 - End of configuration. [testng] [2024-06-07 02:18:35,244] [pool-1-thread-8] Initializing /data/andrew/AL021992_0824_1502: [testng] 02:18:35,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:35,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:35,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-18-35.log] [testng] 02:18:35,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79e7f209 - End of configuration. [testng] [2024-06-07 02:18:35,454] [pool-1-thread-7] Initializing /data/andrew/AL021992_0824_1100: [testng] 02:18:35,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:35,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:35,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-18-35.log] [testng] 02:18:35,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2656b5fb - End of configuration. [testng] [2024-06-07 02:18:35,675] [pool-1-thread-6] Initializing /data/andrew/AL021992_0824_0900marine: [testng] 02:18:35,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:35,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:35,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-18-35.log] [testng] 02:18:35,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e454c7d - End of configuration. [testng] [2024-06-07 02:18:35,791] [pool-1-thread-5] Initializing /data/andrew/AL021992_0824_1100marine: [testng] 02:18:35,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:35,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:35,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-18-35.log] [testng] 02:18:35,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16921d96 - End of configuration. [testng] [2024-06-07 02:18:35,991] [pool-1-thread-4] Initializing /data/iris/AL112001_1009_0130: [testng] 02:18:35,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:35,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:35,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-18-35.log] [testng] 02:18:35,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764b946a - End of configuration. [testng] [2024-06-07 02:18:36,135] [pool-1-thread-3] Initializing /data/andrew/AL021992_0824_0400marine: [testng] 02:18:36,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:36,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:36,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-18-36.log] [testng] 02:18:36,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c32d19 - End of configuration. [testng] [2024-06-07 02:18:36,262] [pool-1-thread-2] Initializing /data/andrew/AL021992_0824_0400: [testng] 02:18:36,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:36,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:36,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-18-36.log] [testng] 02:18:36,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15ed8700 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 477, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS