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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9426237117967700298.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13056_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:28:07,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:28:07,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:28:07,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:28:07,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:28:07,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:28:07,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:28:07,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:28:07,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:28:07,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:28:07,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:28:07,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:28:07,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:28:07,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:28:07,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:28:08,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:28:08,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:28:08,029 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:28:08,029 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:28:08,030 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:28:08,030 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:28:08,031 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:28:08,032 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:28:08,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 359 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 02:28:08,045] [main] java.version = 1.8.0_342 [testng] 02:28:08,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:28:08,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:08,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-28-08.log] [testng] 02:28:08,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 02:28:08,131] [main] testng.directory = /data [testng] [2024-06-07 02:28:08,131] [main] testng.configDirectory = /config [testng] [2024-06-07 02:28:08,151] [main] testng.multiplier = 1.0 [testng] [2024-06-07 02:28:08,152] [main] testng.in-memory = false [testng] [2024-06-07 02:28:08,152] [main] testng.allow-missing = false [testng] [2024-06-07 02:28:08,152] [main] user.language = en [testng] [2024-06-07 02:28:08,152] [main] user.country = ${user.country} [testng] [2024-06-07 02:28:08,152] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 02:28:08,725] [main] ---------------------------------------- [testng] [2024-06-07 02:28:08,725] [main] Total files: 21 [testng] [2024-06-07 02:28:08,725] [main] Scan time: 0.572 s (27 ms/file) [testng] [2024-06-07 02:28:08,726] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 02:28:10,410] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 02:28:10,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:28:10,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-28-10.log] [testng] 02:28:10,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f6fdb8 - End of configuration. [testng] [2024-06-07 02:28:10,514] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 02:28:10,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:28:10,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-28-10.log] [testng] 02:28:10,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54a42a56 - End of configuration. [testng] [2024-06-07 02:28:10,527] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 02:28:10,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:28:10,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-28-10.log] [testng] 02:28:10,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788fc68 - End of configuration. [testng] [2024-06-07 02:28:10,542] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 02:28:10,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:28:10,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-28-10.log] [testng] 02:28:10,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a603d2f - End of configuration. [testng] [2024-06-07 02:28:10,556] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 02:28:10,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:28:10,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-28-10.log] [testng] 02:28:10,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e866581 - End of configuration. [testng] [2024-06-07 02:28:10,566] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 02:28:10,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:28:10,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-28-10.log] [testng] 02:28:10,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c6b33a - End of configuration. [testng] [2024-06-07 02:28:10,578] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:28:10,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:28:10,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-28-10.log] [testng] 02:28:10,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d07845f - End of configuration. [testng] [2024-06-07 02:28:10,586] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 02:28:10,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:28:10,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-28-10.log] [testng] 02:28:10,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3522a6ff - End of configuration. [testng] [2024-06-07 02:28:10,636] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 02:28:10,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:28:10,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-28-10.log] [testng] 02:28:10,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ab4ee6 - End of configuration. [testng] [2024-06-07 02:28:10,645] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 02:28:10,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:28:10,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-28-10.log] [testng] 02:28:10,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d84095c - End of configuration. [testng] [2024-06-07 02:28:10,654] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 02:28:10,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:28:10,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-28-10.log] [testng] 02:28:10,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@761907fb - End of configuration. [testng] [2024-06-07 02:28:10,678] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 02:28:10,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:28:10,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-28-10.log] [testng] 02:28:10,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e5e1fb - End of configuration. [testng] [2024-06-07 02:28:12,463] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2024-06-07 02:28:12,470] [pool-1-thread-8] Initializing /data/samples/spinfox.png: [testng] [2024-06-07 02:28:12,477] [pool-1-thread-3] Initializing /data/samples/william_wong01.png: [testng] [2024-06-07 02:28:12,486] [pool-1-thread-5] Initializing /data/samples/william_wong05.png: [testng] [2024-06-07 02:28:12,494] [pool-1-thread-11] Initializing /data/colin/test.sfstdge.png: [testng] [2024-06-07 02:28:12,498] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-06-07 02:28:12,506] [pool-1-thread-1] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-06-07 02:28:12,515] [pool-1-thread-10] Initializing /data/samples/chompy2.png: [testng] [2024-06-07 02:28:12,523] [pool-1-thread-6] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS