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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1830025143586568080.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13062_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:37:44,069 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:37:44,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:37:44,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:37:44,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:37:44,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:37:44,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:37:44,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:37:44,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:37:44,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:37:44,073 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:37:44,073 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:37:44,073 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:37:44,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:37:44,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:37:44,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:37:44,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:37:44,371 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:37:44,371 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:37:44,372 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:37:44,372 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:37:44,372 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:37:44,373 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:37:44,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 300 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 02:37:44,384] [main] java.version = 1.8.0_342 [testng] 02:37:44,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:37:44,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:44,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-37-44.log] [testng] 02:37:44,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 02:37:44,469] [main] testng.directory = /data [testng] [2024-06-07 02:37:44,469] [main] testng.configDirectory = /config [testng] [2024-06-07 02:37:44,631] [main] testng.multiplier = 1.0 [testng] [2024-06-07 02:37:44,631] [main] testng.in-memory = false [testng] [2024-06-07 02:37:44,631] [main] testng.allow-missing = false [testng] [2024-06-07 02:37:44,631] [main] user.language = en [testng] [2024-06-07 02:37:44,631] [main] user.country = ${user.country} [testng] [2024-06-07 02:37:44,631] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 02:37:45,364] [main] ---------------------------------------- [testng] [2024-06-07 02:37:45,364] [main] Total files: 18 [testng] [2024-06-07 02:37:45,364] [main] Scan time: 0.733 s (40 ms/file) [testng] [2024-06-07 02:37:45,364] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 02:37:47,298] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] 02:37:47,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:37:47,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-37-47.log] [testng] 02:37:47,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a3a2ac8 - End of configuration. [testng] [2024-06-07 02:37:47,383] [pool-1-thread-12] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:37:47,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:37:47,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-37-47.log] [testng] 02:37:47,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3af62591 - End of configuration. [testng] [2024-06-07 02:37:47,408] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:37:47,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:37:47,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-37-47.log] [testng] 02:37:47,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13572a60 - End of configuration. [testng] [2024-06-07 02:37:47,430] [pool-1-thread-10] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:37:47,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:37:47,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-37-47.log] [testng] 02:37:47,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@209b596d - End of configuration. [testng] [2024-06-07 02:37:47,457] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:37:47,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:37:47,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-37-47.log] [testng] 02:37:47,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21aa6f1a - End of configuration. [testng] [2024-06-07 02:37:47,471] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:37:47,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:37:47,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-37-47.log] [testng] 02:37:47,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447c5cf9 - End of configuration. [testng] [2024-06-07 02:37:47,680] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd: [testng] 02:37:47,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:37:47,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-37-47.log] [testng] 02:37:47,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7634e57c - End of configuration. [testng] [2024-06-07 02:37:47,700] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:37:47,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:37:47,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-37-47.log] [testng] 02:37:47,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fa4eac - End of configuration. [testng] [2024-06-07 02:37:47,750] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] 02:37:47,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:37:47,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-37-47.log] [testng] 02:37:47,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b15cd2c - End of configuration. [testng] [2024-06-07 02:37:47,790] [pool-1-thread-4] Initializing /data/misc/smilie.psd: [testng] 02:37:47,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:37:47,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-37-47.log] [testng] 02:37:47,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3e468b - End of configuration. [testng] [2024-06-07 02:37:47,844] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 02:37:47,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:37:47,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-37-47.log] [testng] 02:37:47,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ea449 - End of configuration. [testng] [2024-06-07 02:37:47,991] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd: [testng] 02:37:47,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:37:47,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:47,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-37-47.log] [testng] 02:37:47,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16161854 - End of configuration. [testng] [2024-06-07 02:37:50,752] [pool-1-thread-5] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-06-07 02:37:50,771] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-06-07 02:37:50,805] [pool-1-thread-9] Initializing /data/ascb/423.psd: [testng] [2024-06-07 02:37:51,253] [pool-1-thread-6] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-06-07 02:37:51,272] [pool-1-thread-2] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-06-07 02:37:51,363] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS