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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5778142438181497114.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13085_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:52:53,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:52:53,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:52:53,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:52:53,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:52:53,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:52:53,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:52:53,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 4 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:52:53,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:52:53,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:52:53,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:52:53,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:52:53,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:52:53,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:52:53,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:52:53,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:52:53,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:52:53,614 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:52:53,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:52:53,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:52:53,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:52:53,615 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:52:53,616 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:52:53,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 326 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 02:52:53,627] [main] java.version = 1.8.0_342 [testng] 02:52:53,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:52:53,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:53,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_02-52-53.log] [testng] 02:52:53,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 02:52:53,684] [main] testng.directory = /data [testng] [2024-06-07 02:52:53,684] [main] testng.configDirectory = /config [testng] [2024-06-07 02:52:53,697] [main] testng.multiplier = 1.0 [testng] [2024-06-07 02:52:53,698] [main] testng.in-memory = false [testng] [2024-06-07 02:52:53,698] [main] testng.allow-missing = false [testng] [2024-06-07 02:52:53,698] [main] user.language = en [testng] [2024-06-07 02:52:53,698] [main] user.country = ${user.country} [testng] [2024-06-07 02:52:53,698] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 02:52:56,046] [main] ---------------------------------------- [testng] [2024-06-07 02:52:56,046] [main] Total files: 31 [testng] [2024-06-07 02:52:56,046] [main] Scan time: 2.348 s (75 ms/file) [testng] [2024-06-07 02:52:56,046] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 02:52:58,684] [pool-1-thread-1] Initializing /data/vikram/Captured 4.jp2: [testng] 02:52:58,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:52:58,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_02-52-58.log] [testng] 02:52:58,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1520cbc1 - End of configuration. [testng] [2024-06-07 02:52:58,724] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf: [testng] 02:52:58,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:52:58,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_02-52-58.log] [testng] 02:52:58,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ac8c5c1 - End of configuration. [testng] [2024-06-07 02:52:58,782] [pool-1-thread-11] Initializing /data/venu/Multichannel 3a.jpg: [testng] 02:52:58,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:52:58,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_02-52-58.log] [testng] 02:52:58,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@533f0f6f - End of configuration. [testng] [2024-06-07 02:52:58,841] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] 02:52:58,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:52:58,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_02-52-58.log] [testng] 02:52:58,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7829b26f - End of configuration. [testng] [2024-06-07 02:52:59,013] [pool-1-thread-9] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 02:52:59,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:52:59,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_02-52-59.log] [testng] 02:52:59,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@682064fe - End of configuration. [testng] [2024-06-07 02:52:59,038] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] 02:52:59,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:52:59,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_02-52-59.log] [testng] 02:52:59,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33b05606 - End of configuration. [testng] [2024-06-07 02:52:59,089] [pool-1-thread-7] Initializing /data/vikram/Captured 1.jp2: [testng] 02:52:59,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:52:59,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_02-52-59.log] [testng] 02:52:59,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b45d772 - End of configuration. [testng] [2024-06-07 02:52:59,153] [pool-1-thread-6] Initializing /data/kraig/head.jp2: [testng] 02:52:59,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:52:59,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_02-52-59.log] [testng] 02:52:59,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c530d81 - End of configuration. [testng] [2024-06-07 02:52:59,211] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jpc: [testng] 02:52:59,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:52:59,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_02-52-59.log] [testng] 02:52:59,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47c6d55d - End of configuration. [testng] [2024-06-07 02:52:59,222] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jp2: [testng] 02:52:59,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:52:59,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_02-52-59.log] [testng] 02:52:59,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c8c4ae - End of configuration. [testng] [2024-06-07 02:52:59,231] [pool-1-thread-3] Initializing /data/big-images/2kx2k.jpf: [testng] 02:52:59,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:52:59,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_02-52-59.log] [testng] 02:52:59,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@164bbb66 - End of configuration. [testng] [2024-06-07 02:52:59,264] [pool-1-thread-2] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 02:52:59,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:52:59,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_02-52-59.log] [testng] 02:52:59,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ffbd5 - End of configuration. [testng] [2024-06-07 02:53:01,932] [pool-1-thread-11] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-06-07 02:53:01,961] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-06-07 02:53:02,010] [pool-1-thread-4] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-06-07 02:53:02,440] [pool-1-thread-7] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-06-07 02:53:02,677] [pool-1-thread-8] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-06-07 02:53:03,242] [pool-1-thread-1] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-06-07 02:53:03,274] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-06-07 02:53:03,888] [pool-1-thread-11] Initializing /data/david/cy5-tph.jp2: [testng] [2024-06-07 02:53:04,979] [pool-1-thread-5] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-06-07 02:53:05,614] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] [2024-06-07 02:53:06,905] [pool-1-thread-1] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-06-07 02:53:10,946] [pool-1-thread-2] Initializing /data/frans/flower.jp2: [testng] [2024-06-07 02:53:12,865] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-06-07 02:53:13,180] [pool-1-thread-5] Initializing /data/david/000000_000001.jpx: [testng] [2024-06-07 02:53:14,541] [pool-1-thread-3] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-06-07 02:53:19,760] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-06-07 02:53:22,343] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-06-07 02:53:24,953] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 23 seconds Finished: SUCCESS