Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 86
originally caused by:
 Started by upstream project "Trigger" build number 97
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3725773484557159562.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13104_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:21:25,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:21:25,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:21:25,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:21:25,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:21:25,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:21:25,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:21:25,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:21:25,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:21:25,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:21:25,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:21:25,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:21:25,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:21:25,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:21:25,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:21:25,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:21:25,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:21:25,704 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:21:25,704 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:21:25,704 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:21:25,705 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:21:25,705 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:21:25,706 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:21:25,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-08 01:21:25,717] [main] java.version = 11.0.16
   [testng] 01:21:25,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:21:25,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:25,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-08_01-21-25.log]
   [testng] 01:21:25,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-06-08 01:21:25,772] [main] testng.directory = /data
   [testng] [2024-06-08 01:21:25,773] [main] testng.configDirectory = /config
   [testng] [2024-06-08 01:21:25,784] [main] testng.multiplier = 1.0
   [testng] [2024-06-08 01:21:25,786] [main] testng.in-memory = false
   [testng] [2024-06-08 01:21:25,786] [main] testng.allow-missing = false
   [testng] [2024-06-08 01:21:25,786] [main] user.language = en
   [testng] [2024-06-08 01:21:25,786] [main] user.country = ${user.country}
   [testng] [2024-06-08 01:21:25,786] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-06-08 01:21:39,656] [main] ----------------------------------------
   [testng] [2024-06-08 01:21:39,656] [main] Total files: 283
   [testng] [2024-06-08 01:21:39,656] [main] Scan time: 13.869 s (49 ms/file)
   [testng] [2024-06-08 01:21:39,656] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 186 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-08 01:30:03,929] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: 
   [testng] 01:30:03,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:30:03,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:03,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-08_01-30-03.log]
   [testng] 01:30:03,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b16ff1b - End of configuration.
   [testng] [2024-06-08 01:30:04,381] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: 
   [testng] 01:30:04,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:30:04,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:04,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-08_01-30-04.log]
   [testng] 01:30:04,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61f711e8 - End of configuration.
   [testng] [2024-06-08 01:30:04,476] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: 
   [testng] 01:30:04,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:30:04,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:04,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-08_01-30-04.log]
   [testng] 01:30:04,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2051e821 - End of configuration.
   [testng] [2024-06-08 01:30:04,727] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.ome.tif: 
   [testng] 01:30:04,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:30:04,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:04,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-08_01-30-04.log]
   [testng] 01:30:04,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67f5bd4f - End of configuration.
   [testng] [2024-06-08 01:30:04,828] [pool-1-thread-9] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: 
   [testng] 01:30:04,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:30:04,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:04,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-08_01-30-04.log]
   [testng] 01:30:04,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78ad00a4 - End of configuration.
   [testng] [2024-06-08 01:30:04,858] [pool-1-thread-8] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: 
   [testng] 01:30:04,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:30:04,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:04,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-08_01-30-04.log]
   [testng] 01:30:04,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ab7a0c - End of configuration.
   [testng] [2024-06-08 01:30:04,934] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: 
   [testng] 01:30:04,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:30:04,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:04,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-08_01-30-04.log]
   [testng] 01:30:04,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@547be12 - End of configuration.
   [testng] [2024-06-08 01:30:05,116] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif: 
   [testng] 01:30:05,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:30:05,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:05,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-08_01-30-05.log]
   [testng] 01:30:05,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27fd4c2 - End of configuration.
   [testng] [2024-06-08 01:30:05,194] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: 
   [testng] 01:30:05,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:30:05,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:05,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-08_01-30-05.log]
   [testng] 01:30:05,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0a3ff3 - End of configuration.
   [testng] [2024-06-08 01:30:05,257] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: 
   [testng] 01:30:05,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:30:05,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:05,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-08_01-30-05.log]
   [testng] 01:30:05,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27570c04 - End of configuration.
   [testng] [2024-06-08 01:30:08,374] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: 
   [testng] 01:30:08,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:30:08,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:08,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-08_01-30-08.log]
   [testng] 01:30:08,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39de595b - End of configuration.
   [testng] [2024-06-08 01:30:08,508] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: 
   [testng] 01:30:08,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:30:08,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:08,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-08_01-30-08.log]
   [testng] 01:30:08,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@424f215f - End of configuration.
   [testng] [2024-06-08 01:30:12,297] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: 
   [testng] [2024-06-08 01:30:12,368] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: 
   [testng] [2024-06-08 01:30:12,423] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: 
   [testng] [2024-06-08 01:30:12,954] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: 
   [testng] [2024-06-08 01:30:13,153] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.ome.tif: 
   [testng] [2024-06-08 01:30:13,283] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: 
   [testng] [2024-06-08 01:30:13,408] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: 
   [testng] [2024-06-08 01:30:13,627] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: 
   [testng] [2024-06-08 01:30:13,780] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: 
   [testng] [2024-06-08 01:30:14,238] [pool-1-thread-9] Initializing /data/public/etienne/amy slice z stack_0001.oir: 
   [testng] [2024-06-08 01:30:14,657] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: 
   [testng] [2024-06-08 01:30:16,674] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.ome.tif: 
   [testng] [2024-06-08 01:30:17,249] [pool-1-thread-12] Initializing /data/qa-17919/f10187.oir: 
   [testng] [2024-06-08 01:30:35,452] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.oir: 
   [testng] [2024-06-08 01:30:35,971] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: 
   [testng] [2024-06-08 01:30:36,083] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: 
   [testng] [2024-06-08 01:30:36,143] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: 
   [testng] [2024-06-08 01:30:36,193] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.oir: 
   [testng] [2024-06-08 01:30:36,352] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: 
   [testng] [2024-06-08 01:30:36,384] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif: 
   [testng] [2024-06-08 01:30:37,672] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: 
   [testng] [2024-06-08 01:30:37,866] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: 
   [testng] [2024-06-08 01:30:38,383] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: 
   [testng] [2024-06-08 01:30:38,753] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: 
   [testng] [2024-06-08 01:30:38,917] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir: 
   [testng] [2024-06-08 01:30:40,273] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: 
   [testng] [2024-06-08 01:30:40,322] [pool-1-thread-1] Initializing /data/cudmore/20190401__0005.oir: 
   [testng] [2024-06-08 01:30:45,386] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.oir: 
   [testng] [2024-06-08 01:30:46,204] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: 
   [testng] [2024-06-08 01:30:46,347] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: 
   [testng] [2024-06-08 01:30:47,053] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: 
   [testng] [2024-06-08 01:30:47,116] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: 
   [testng] [2024-06-08 01:30:47,571] [pool-1-thread-9] Initializing /data/qa-17270/stack1.ome.tif: 
   [testng] [2024-06-08 01:30:48,373] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif: 
   [testng] [2024-06-08 01:30:48,603] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: 
   [testng] [2024-06-08 01:30:48,752] [pool-1-thread-6] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: 
   [testng] [2024-06-08 01:30:49,564] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: 
   [testng] [2024-06-08 01:30:49,705] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: 
   [testng] [2024-06-08 01:30:49,793] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: 
   [testng] [2024-06-08 01:30:50,867] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.oir: 
   [testng] [2024-06-08 01:30:51,124] [pool-1-thread-9] Initializing /data/olympus/XYZt.ome.tif: 
   [testng] [2024-06-08 01:30:51,478] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: 
   [testng] [2024-06-08 01:30:51,715] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: 
   [testng] [2024-06-08 01:30:54,020] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: 
   [testng] [2024-06-08 01:30:54,129] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir: 
   [testng] [2024-06-08 01:30:55,442] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: 
   [testng] [2024-06-08 01:30:56,710] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-1.tif: 
   [testng] [2024-06-08 01:30:56,820] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.oir: 
   [testng] [2024-06-08 01:30:56,983] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.oir: 
   [testng] [2024-06-08 01:30:57,384] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: 
   [testng] [2024-06-08 01:30:57,800] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.oir: 
   [testng] [2024-06-08 01:30:58,478] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: 
   [testng] [2024-06-08 01:30:58,534] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: 
   [testng] [2024-06-08 01:30:58,623] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: 
   [testng] [2024-06-08 01:30:59,226] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: 
   [testng] [2024-06-08 01:30:59,602] [pool-1-thread-3] Initializing /data/qa-17270/image1.ome.tif: 
   [testng] [2024-06-08 01:30:59,746] [pool-1-thread-5] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: 
   [testng] [2024-06-08 01:30:59,841] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: 
   [testng] [2024-06-08 01:31:00,370] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif: 
   [testng] [2024-06-08 01:31:00,558] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif: 
   [testng] [2024-06-08 01:31:00,938] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: 
   [testng] [2024-06-08 01:31:01,593] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/zebra shg.oir: 
   [testng] [2024-06-08 01:31:03,641] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: 
   [testng] [2024-06-08 01:31:03,701] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.ome.tif: 
   [testng] [2024-06-08 01:31:03,814] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: 
   [testng] [2024-06-08 01:31:04,598] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: 
   [testng] [2024-06-08 01:31:05,084] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.oir: 
   [testng] [2024-06-08 01:31:05,442] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: 
   [testng] [2024-06-08 01:31:05,656] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: 
   [testng] [2024-06-08 01:31:05,903] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: 
   [testng] [2024-06-08 01:31:06,027] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif: 
   [testng] [2024-06-08 01:31:07,309] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: 
   [testng] [2024-06-08 01:31:07,424] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: 
   [testng] [2024-06-08 01:31:07,616] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: 
   [testng] [2024-06-08 01:31:07,667] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: 
   [testng] [2024-06-08 01:31:08,360] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: 
   [testng] [2024-06-08 01:31:08,771] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: 
   [testng] [2024-06-08 01:31:08,995] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: 
   [testng] [2024-06-08 01:31:10,728] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: 
   [testng] [2024-06-08 01:31:11,004] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: 
   [testng] [2024-06-08 01:31:11,338] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: 
   [testng] [2024-06-08 01:31:12,189] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: 
   [testng] [2024-06-08 01:31:16,043] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: 
   [testng] [2024-06-08 01:31:16,097] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: 
   [testng] [2024-06-08 01:31:16,144] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: 
   [testng] [2024-06-08 01:31:16,474] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: 
   [testng] [2024-06-08 01:31:17,572] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: 
   [testng] [2024-06-08 01:31:17,657] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir: 
   [testng] [2024-06-08 01:31:18,022] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: 
   [testng] [2024-06-08 01:31:18,111] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: 
   [testng] [2024-06-08 01:31:18,580] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: 
   [testng] [2024-06-08 01:31:19,390] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.oir: 
   [testng] [2024-06-08 01:31:19,875] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif: 
   [testng] [2024-06-08 01:31:20,271] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: 
   [testng] [2024-06-08 01:31:20,631] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: 
   [testng] [2024-06-08 01:31:20,686] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: 
   [testng] [2024-06-08 01:31:21,384] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: 
   [testng] [2024-06-08 01:31:23,495] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: 
   [testng] [2024-06-08 01:31:24,041] [pool-1-thread-8] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: 
   [testng] [2024-06-08 01:32:17,437] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: 
   [testng] [2024-06-08 01:32:17,793] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: 
   [testng] [2024-06-08 01:32:17,919] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: 
   [testng] [2024-06-08 01:32:18,188] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: 
   [testng] [2024-06-08 01:32:18,687] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: 
   [testng] [2024-06-08 01:32:19,375] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: 
   [testng] [2024-06-08 01:32:41,467] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: 
   [testng] [2024-06-08 01:32:41,927] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: 
   [testng] [2024-06-08 01:32:42,135] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: 
   [testng] [2024-06-08 01:32:42,274] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: 
   [testng] [2024-06-08 01:32:42,581] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: 
   [testng] [2024-06-08 01:32:42,886] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: 
   [testng] [2024-06-08 01:32:43,117] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir: 
   [testng] [2024-06-08 01:32:43,461] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: 
   [testng] [2024-06-08 01:32:44,054] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir: 
   [testng] [2024-06-08 01:32:44,338] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif: 
   [testng] [2024-06-08 01:32:44,551] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: 
   [testng] [2024-06-08 01:32:45,086] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir: 
   [testng] [2024-06-08 01:33:11,651] [pool-1-thread-6] Initializing /data/qa-21508/Stitch_A01_G008.oir: 
   [testng] [2024-06-08 01:33:12,148] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: 
   [testng] [2024-06-08 01:33:12,576] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: 
   [testng] [2024-06-08 01:33:12,651] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: 
   [testng] [2024-06-08 01:33:13,489] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg: 
   [testng] [2024-06-08 01:33:13,872] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif: 
   [testng] [2024-06-08 01:33:13,947] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.oir: 
   [testng] [2024-06-08 01:33:14,941] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: 
   [testng] [2024-06-08 01:33:15,316] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: 
   [testng] [2024-06-08 01:33:16,201] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: 
   [testng] [2024-06-08 01:33:16,748] [pool-1-thread-10] Initializing /data/qa-16871/Clipboard.tif: 
   [testng] [2024-06-08 01:33:17,150] [pool-1-thread-11] Initializing /data/qa-17409/Clipboard.tif: 
   [testng] [2024-06-08 01:33:17,498] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001.oir: 
   [testng] [2024-06-08 01:33:18,470] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: 
   [testng] [2024-06-08 01:33:18,525] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: 
   [testng] [2024-06-08 01:33:18,774] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: 
   [testng] [2024-06-08 01:33:20,579] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: 
   [testng] [2024-06-08 01:33:20,659] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: 
   [testng] [2024-06-08 01:33:21,733] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: 
   [testng] [2024-06-08 01:33:21,933] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.oir: 
   [testng] [2024-06-08 01:33:23,204] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-image1.tif: 
   [testng] [2024-06-08 01:33:23,530] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif: 
   [testng] [2024-06-08 01:33:23,581] [pool-1-thread-2] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: 
   [testng] [2024-06-08 01:33:25,006] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: 
   [testng] [2024-06-08 01:33:25,113] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.oir: 
   [testng] [2024-06-08 01:33:25,968] [pool-1-thread-10] Initializing /data/qa-17335/1.oir: 
   [testng] [2024-06-08 01:33:26,216] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: 
   [testng] [2024-06-08 01:33:26,621] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0006.oir: 
   [testng] [2024-06-08 01:33:26,799] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: 
   [testng] [2024-06-08 01:33:27,213] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.vsi: 
   [testng] [2024-06-08 01:33:27,629] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: 
   [testng] [2024-06-08 01:33:28,289] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: 
   [testng] [2024-06-08 01:33:28,379] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: 
   [testng] [2024-06-08 01:33:28,857] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: 
   [testng] [2024-06-08 01:33:29,017] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.ome.tif: 
   [testng] [2024-06-08 01:33:29,399] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-alexa488.tif: 
   [testng] [2024-06-08 01:33:29,542] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: 
   [testng] [2024-06-08 01:33:30,051] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: 
   [testng] [2024-06-08 01:33:30,217] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: 
   [testng] [2024-06-08 01:33:30,710] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: 
   [testng] [2024-06-08 01:33:30,943] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: 
   [testng] [2024-06-08 01:33:31,332] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: 
   [testng] [2024-06-08 01:33:31,809] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: 
   [testng] [2024-06-08 01:33:32,468] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: 
   [testng] [2024-06-08 01:33:32,596] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: 
   [testng] [2024-06-08 01:33:32,843] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: 
   [testng] [2024-06-08 01:33:33,057] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: 
   [testng] [2024-06-08 01:33:33,457] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: 
   [testng] [2024-06-08 01:33:34,035] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: 
   [testng] [2024-06-08 01:33:34,470] [pool-1-thread-1] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: 
   [testng] [2024-06-08 01:33:34,549] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: 
   [testng] [2024-06-08 01:33:34,781] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: 
   [testng] [2024-06-08 01:33:35,501] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: 
   [testng] [2024-06-08 01:33:40,477] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: 
   [testng] [2024-06-08 01:33:40,599] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: 
   [testng] [2024-06-08 01:33:41,028] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: 
   [testng] [2024-06-08 01:33:41,125] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.oir: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 9858, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 59 minutes 21 seconds
Finished: SUCCESS