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Started by upstream project "BIOFORMATS-test-repo" build number 86 originally caused by: Started by upstream project "Trigger" build number 97 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9668221956840550764.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13178_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:56:42,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:56:42,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:56:42,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:42,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:42,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:56:42,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:56:42,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:56:42,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:42,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:42,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:56:42,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:56:42,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:56:42,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:56:42,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:56:43,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:56:43,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:56:43,028 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:56:43,028 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:56:43,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:56:43,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:56:43,029 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:56:43,030 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:56:43,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-08 01:56:43,041] [main] java.version = 11.0.16 [testng] 01:56:43,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:56:43,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:43,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-08_01-56-43.log] [testng] 01:56:43,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-08 01:56:43,106] [main] testng.directory = /data [testng] [2024-06-08 01:56:43,106] [main] testng.configDirectory = /config [testng] [2024-06-08 01:56:43,123] [main] testng.multiplier = 1.0 [testng] [2024-06-08 01:56:43,126] [main] testng.in-memory = false [testng] [2024-06-08 01:56:43,126] [main] testng.allow-missing = false [testng] [2024-06-08 01:56:43,126] [main] user.language = en [testng] [2024-06-08 01:56:43,126] [main] user.country = ${user.country} [testng] [2024-06-08 01:56:43,126] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-08 02:04:05,409] [main] ---------------------------------------- [testng] [2024-06-08 02:04:05,409] [main] Total files: 7329 [testng] [2024-06-08 02:04:05,410] [main] Scan time: 442.283 s (60 ms/file) [testng] [2024-06-08 02:04:05,410] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-08 02:07:39,273] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:07:39,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:39,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:39,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-08_02-07-39.log] [testng] 02:07:39,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c0f4e1 - End of configuration. [testng] [2024-06-08 02:07:39,355] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-08 02:07:39,361] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:07:39,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:39,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:39,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-08_02-07-39.log] [testng] 02:07:39,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c7a07c9 - End of configuration. [testng] [2024-06-08 02:07:39,853] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:07:39,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:39,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:39,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-08_02-07-39.log] [testng] 02:07:39,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0daff3 - End of configuration. [testng] [2024-06-08 02:07:39,935] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:07:39,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:39,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:39,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-08_02-07-39.log] [testng] 02:07:39,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@372f2fef - End of configuration. [testng] [2024-06-08 02:07:40,000] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:07:40,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:40,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-08_02-07-40.log] [testng] 02:07:40,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3608c141 - End of configuration. [testng] [2024-06-08 02:07:40,051] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-08 02:07:40,053] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:07:40,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:40,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-08_02-07-40.log] [testng] 02:07:40,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@152e4484 - End of configuration. [testng] [2024-06-08 02:07:40,152] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:07:40,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:40,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-08_02-07-40.log] [testng] 02:07:40,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eb6f403 - End of configuration. [testng] [2024-06-08 02:07:40,183] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:07:40,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:40,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-08_02-07-40.log] [testng] 02:07:40,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e9a068 - End of configuration. [testng] [2024-06-08 02:07:40,250] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:07:40,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:40,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-08_02-07-40.log] [testng] 02:07:40,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35aaf6b5 - End of configuration. [testng] [2024-06-08 02:07:40,313] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-08 02:07:40,315] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:07:40,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:40,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-08_02-07-40.log] [testng] 02:07:40,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@167ba822 - End of configuration. [testng] [2024-06-08 02:07:40,442] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:07:40,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:40,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-08_02-07-40.log] [testng] 02:07:40,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f28186 - End of configuration. [testng] [2024-06-08 02:07:40,508] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:07:40,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:40,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:40,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-08_02-07-40.log] [testng] 02:07:40,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16d2cec3 - End of configuration. [testng] [2024-06-08 02:07:42,406] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-08 02:07:42,878] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-08 02:07:43,089] [pool-1-thread-3] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-08 02:07:43,135] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-08 02:07:43,256] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-08 02:07:43,383] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-08 02:07:43,474] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-08 02:07:43,546] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-08 02:07:44,206] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-08 02:07:44,639] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-08 02:07:44,809] [pool-1-thread-9] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-08 02:07:44,950] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-08 02:07:44,993] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-06-08 02:07:45,138] [pool-1-thread-5] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-08 02:07:45,369] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-08 02:07:45,391] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-08 02:07:45,393] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-08 02:07:45,808] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-08 02:07:45,925] [pool-1-thread-10] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-08 02:07:46,571] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-08 02:07:46,668] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-08 02:07:46,717] [pool-1-thread-12] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-08 02:07:46,766] [pool-1-thread-9] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-08 02:07:46,778] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-08 02:07:46,870] [pool-1-thread-8] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-08 02:07:49,316] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-08 02:07:49,418] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-08 02:07:49,466] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-08 02:07:49,945] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2024-06-08 02:07:50,569] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-08 02:07:50,641] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-08 02:07:50,710] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-08 02:07:50,787] [pool-1-thread-6] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-08 02:07:50,964] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-08 02:07:51,873] [pool-1-thread-4] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-08 02:07:52,182] [pool-1-thread-3] Initializing /data/samples/zserEight.stk: [testng] [2024-06-08 02:07:52,294] [pool-1-thread-11] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-08 02:07:52,388] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-08 02:07:52,594] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-08 02:07:52,652] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-08 02:07:55,505] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-08 02:07:55,718] [pool-1-thread-11] Initializing /data/samples/zser24.stk: [testng] [2024-06-08 02:07:55,826] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-08 02:07:56,126] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-08 02:07:56,219] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-08 02:07:56,297] [pool-1-thread-1] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-08 02:07:56,412] [pool-1-thread-7] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-08 02:07:56,782] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-08 02:07:57,561] [pool-1-thread-1] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-08 02:07:57,871] [pool-1-thread-7] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-08 02:07:58,293] [pool-1-thread-6] Initializing 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[pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-08 02:08:01,619] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-08 02:08:01,828] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-08 02:08:02,264] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-08 02:08:02,856] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-08 02:08:03,191] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-08 02:08:03,830] [pool-1-thread-5] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-08 02:08:06,981] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-08 02:08:07,296] [pool-1-thread-6] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. 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[testng] [2024-06-08 02:08:10,239] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-08 02:08:10,320] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-08 02:08:10,857] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-08 02:08:11,424] [pool-1-thread-3] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-08 02:08:13,028] [pool-1-thread-10] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-08 02:08:13,937] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-08 02:08:14,024] [pool-1-thread-1] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-08 02:08:14,345] [pool-1-thread-7] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-08 02:08:14,694] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-08 02:08:14,751] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-08 02:08:14,984] [pool-1-thread-8] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-08 02:08:15,835] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-06-08 02:08:16,182] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-06-08 02:08:17,711] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-08 02:08:18,048] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-06-08 02:08:19,845] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-06-08 02:08:19,896] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-08 02:08:19,898] [pool-1-thread-10] 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02:08:29,778] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-08 02:08:30,668] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-08 02:08:31,301] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-08 02:08:31,571] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-08 02:08:31,755] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-08 02:08:32,218] [pool-1-thread-9] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-08 02:08:32,400] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-08 02:08:32,746] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-08 02:08:33,102] [pool-1-thread-1] Initializing 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[pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-06-08 02:08:36,948] [pool-1-thread-6] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-06-08 02:08:37,961] [pool-1-thread-8] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-06-08 02:08:38,088] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-08 02:08:38,548] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-08 02:08:39,707] [pool-1-thread-5] Initializing /data/thomas/test.tif: [testng] [2024-06-08 02:08:39,893] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-08 02:08:39,994] [pool-1-thread-6] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-08 02:08:41,245] [pool-1-thread-8] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-08 02:08:41,467] [pool-1-thread-5] Initializing 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[2024-06-08 02:08:46,968] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-08 02:08:47,862] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-08 02:08:50,097] [pool-1-thread-1] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-08 02:08:50,399] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-06-08 02:08:50,722] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-08 02:08:50,800] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-08 02:08:50,942] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-08 02:08:51,256] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-06-08 02:08:51,961] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-06-08 02:08:52,453] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-06-08 02:08:52,564] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-06-08 02:08:52,888] [pool-1-thread-10] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-08 02:08:53,119] [pool-1-thread-1] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-08 02:08:53,409] [pool-1-thread-2] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-08 02:08:53,949] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-08 02:08:54,037] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-08 02:08:54,126] [pool-1-thread-1] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-08 02:08:54,946] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-08 02:08:55,417] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-08 02:08:55,490] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-08 02:08:55,499] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-08 02:08:55,534] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-08 02:08:55,731] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-08 02:08:55,958] [pool-1-thread-12] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-08 02:08:56,143] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-08 02:08:56,301] [pool-1-thread-2] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-08 02:08:57,107] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-08 02:08:57,350] [pool-1-thread-2] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-08 02:09:04,738] [pool-1-thread-3] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-08 02:09:04,825] [pool-1-thread-1] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-08 02:09:06,053] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-08 02:09:06,174] [pool-1-thread-9] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-08 02:09:06,847] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-08 02:09:06,946] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-08 02:09:07,037] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-08 02:09:08,008] [pool-1-thread-1] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-08 02:09:08,145] [pool-1-thread-10] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-08 02:09:08,710] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-08 02:09:09,983] [pool-1-thread-1] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-08 02:09:10,722] [pool-1-thread-3] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-08 02:09:11,075] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-08 02:09:11,515] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-08 02:09:12,185] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-08 02:09:12,751] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-08 02:09:12,990] [pool-1-thread-3] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-08 02:09:14,104] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-08 02:09:14,486] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-08 02:09:14,551] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-08 02:09:14,649] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-08 02:09:15,121] [pool-1-thread-8] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-08 02:09:15,275] [pool-1-thread-5] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-08 02:09:16,962] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-08 02:09:17,027] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-08 02:09:18,045] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-08 02:09:18,155] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-08 02:09:18,250] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-08 02:09:18,585] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-08 02:09:18,801] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-08 02:09:19,170] [pool-1-thread-10] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-08 02:09:19,512] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-08 02:09:20,261] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-08 02:09:21,614] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-08 02:09:21,815] [pool-1-thread-11] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-08 02:09:22,142] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-08 02:09:22,823] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-08 02:09:22,898] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-08 02:09:23,107] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-08 02:09:23,612] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-08 02:09:23,943] [pool-1-thread-5] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-08 02:09:25,550] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-08 02:09:25,641] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-08 02:09:25,745] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-08 02:09:25,824] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-08 02:09:25,896] [pool-1-thread-7] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 2 seconds Finished: SUCCESS