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Started by upstream project "BIOFORMATS-test-repo" build number 87 originally caused by: Started by upstream project "Trigger" build number 98 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3370534710691805865.sh + '[' lim = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13272_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:22:03,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:03,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:22:03,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:03,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:03,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:03,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:03,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:03,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:03,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:03,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:03,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:03,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:03,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:03,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:03,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:03,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:03,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:03,591 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:03,591 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:03,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:03,592 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:22:03,593 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:22:03,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 225 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-09 01:22:03,602] [main] java.version = 17.0.2 [testng] 01:22:03,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:03,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-09_01-22-03.log] [testng] 01:22:03,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-09 01:22:03,673] [main] testng.directory = /data [testng] [2024-06-09 01:22:03,674] [main] testng.configDirectory = /config [testng] [2024-06-09 01:22:03,688] [main] testng.multiplier = 1.0 [testng] [2024-06-09 01:22:03,689] [main] testng.in-memory = false [testng] [2024-06-09 01:22:03,689] [main] testng.allow-missing = false [testng] [2024-06-09 01:22:03,689] [main] user.language = en [testng] [2024-06-09 01:22:03,690] [main] user.country = ${user.country} [testng] [2024-06-09 01:22:03,690] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-09 01:22:04,157] [main] ---------------------------------------- [testng] [2024-06-09 01:22:04,158] [main] Total files: 21 [testng] [2024-06-09 01:22:04,158] [main] Scan time: 0.467 s (22 ms/file) [testng] [2024-06-09 01:22:04,158] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-09 01:22:05,498] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim: [testng] 01:22:05,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:05,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-09_01-22-05.log] [testng] 01:22:05,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a51294 - End of configuration. [testng] [2024-06-09 01:22:05,575] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:22:05,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:05,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-09_01-22-05.log] [testng] 01:22:05,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3151a3b3 - End of configuration. [testng] [2024-06-09 01:22:05,594] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:22:05,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:05,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-09_01-22-05.log] [testng] 01:22:05,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23486705 - End of configuration. [testng] [2024-06-09 01:22:05,623] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim: [testng] 01:22:05,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:05,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-09_01-22-05.log] [testng] 01:22:05,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7418af50 - End of configuration. [testng] [2024-06-09 01:22:05,654] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:22:05,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:05,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-09_01-22-05.log] [testng] 01:22:05,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b1497d - End of configuration. [testng] [2024-06-09 01:22:05,678] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] 01:22:05,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:05,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-09_01-22-05.log] [testng] 01:22:05,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12455d7e - End of configuration. [testng] [2024-06-09 01:22:05,712] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim: [testng] 01:22:05,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:05,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-09_01-22-05.log] [testng] 01:22:05,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b11b4a5 - End of configuration. [testng] [2024-06-09 01:22:05,735] [pool-1-thread-6] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:22:05,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:05,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-09_01-22-05.log] [testng] 01:22:05,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7b7883 - End of configuration. [testng] [2024-06-09 01:22:05,754] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim: [testng] 01:22:05,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:05,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-09_01-22-05.log] [testng] 01:22:05,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a89e1c - End of configuration. [testng] [2024-06-09 01:22:05,778] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:22:05,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:05,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-09_01-22-05.log] [testng] 01:22:05,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bc10b8 - End of configuration. [testng] [2024-06-09 01:22:05,797] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:22:05,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:05,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-09_01-22-05.log] [testng] 01:22:05,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1070fb26 - End of configuration. [testng] [2024-06-09 01:22:05,814] [pool-1-thread-2] Initializing /data/venu/Kontrolle0018.lim: [testng] 01:22:05,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:05,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-09_01-22-05.log] [testng] 01:22:05,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a19f1cf - End of configuration. [testng] [2024-06-09 01:22:08,241] [pool-1-thread-3] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-06-09 01:22:08,265] [pool-1-thread-10] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-06-09 01:22:08,287] [pool-1-thread-5] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-06-09 01:22:08,313] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-06-09 01:22:08,336] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] [2024-06-09 01:22:08,360] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-06-09 01:22:08,387] [pool-1-thread-12] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-06-09 01:22:08,406] [pool-1-thread-7] Initializing /data/venu/Kontrolle0017.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS