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Started by upstream project "BIOFORMATS-test-repo" build number 88 originally caused by: Started by upstream project "Trigger" build number 99 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15176001789652361268.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_13432_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:21:02,786 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:02,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:21:02,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:02,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:02,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:02,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:02,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:02,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:02,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:02,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:02,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:02,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:03,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:03,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:03,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:03,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:03,181 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:03,181 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:03,181 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:03,182 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:03,182 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:21:03,184 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:21:03,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 393 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-10 01:21:03,201] [main] java.version = 1.8.0_342 [testng] 01:21:03,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:03,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:03,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_01-21-03.log] [testng] 01:21:03,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-10 01:21:03,273] [main] testng.directory = /data [testng] [2024-06-10 01:21:03,273] [main] testng.configDirectory = /config [testng] [2024-06-10 01:21:03,287] [main] testng.multiplier = 1.0 [testng] [2024-06-10 01:21:03,287] [main] testng.in-memory = false [testng] [2024-06-10 01:21:03,287] [main] testng.allow-missing = false [testng] [2024-06-10 01:21:03,287] [main] user.language = fr [testng] [2024-06-10 01:21:03,287] [main] user.country = FR [testng] [2024-06-10 01:21:03,287] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-10 01:21:23,190] [main] ---------------------------------------- [testng] [2024-06-10 01:21:23,190] [main] Total files: 283 [testng] [2024-06-10 01:21:23,190] [main] Scan time: 19.903 s (70 ms/file) [testng] [2024-06-10 01:21:23,190] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-10 01:30:55,499] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:30:55,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:55,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:55,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-10_01-30-55.log] [testng] 01:30:55,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7425e51e - End of configuration. [testng] [2024-06-10 01:30:55,528] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] 01:30:55,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:55,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:55,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-10_01-30-55.log] [testng] 01:30:55,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fbb1b26 - End of configuration. [testng] [2024-06-10 01:30:55,748] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 01:30:55,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:55,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:55,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-10_01-30-55.log] [testng] 01:30:55,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@253409f - End of configuration. [testng] [2024-06-10 01:30:55,807] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] 01:30:55,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:55,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:55,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-10_01-30-55.log] [testng] 01:30:55,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34b91422 - End of configuration. [testng] [2024-06-10 01:30:55,948] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] 01:30:55,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:55,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:55,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-10_01-30-55.log] [testng] 01:30:55,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e910a0d - End of configuration. [testng] [2024-06-10 01:30:56,159] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 01:30:56,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:56,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-10_01-30-56.log] [testng] 01:30:56,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145c10d4 - End of configuration. [testng] [2024-06-10 01:30:56,614] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] 01:30:56,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:56,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-10_01-30-56.log] [testng] 01:30:56,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6985f72a - End of configuration. [testng] [2024-06-10 01:30:56,934] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] 01:30:56,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:56,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-10_01-30-56.log] [testng] 01:30:56,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd6bdc4 - End of configuration. [testng] [2024-06-10 01:30:57,162] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] 01:30:57,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:57,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-10_01-30-57.log] [testng] 01:30:57,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e3e57d - End of configuration. [testng] [2024-06-10 01:30:57,684] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] 01:30:57,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:57,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-10_01-30-57.log] [testng] 01:30:57,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ca7afd - End of configuration. [testng] [2024-06-10 01:30:57,728] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] 01:30:57,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:57,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-10_01-30-57.log] [testng] 01:30:57,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@774d5dca - End of configuration. [testng] [2024-06-10 01:30:57,777] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] 01:30:57,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:57,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-10_01-30-57.log] [testng] 01:30:57,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16471cb5 - End of configuration. [testng] [2024-06-10 01:31:00,712] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-06-10 01:31:00,789] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-06-10 01:31:01,298] [pool-1-thread-4] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-06-10 01:31:01,382] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-06-10 01:31:01,535] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-06-10 01:31:01,644] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-06-10 01:31:02,884] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: [testng] [2024-06-10 01:31:03,201] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-06-10 01:31:03,301] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-06-10 01:31:03,747] [pool-1-thread-2] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-06-10 01:31:05,167] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-06-10 01:31:05,328] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-06-10 01:31:05,373] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-06-10 01:31:05,466] [pool-1-thread-9] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-06-10 01:31:05,830] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-06-10 01:31:06,024] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-06-10 01:31:06,543] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-06-10 01:31:06,951] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-06-10 01:31:07,077] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-06-10 01:31:07,129] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-06-10 01:31:07,208] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-06-10 01:31:11,072] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-06-10 01:31:11,270] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-06-10 01:31:12,549] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-06-10 01:31:12,937] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir: [testng] [2024-06-10 01:31:16,283] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-06-10 01:31:16,785] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-06-10 01:31:17,939] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-06-10 01:31:22,190] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-06-10 01:31:22,424] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-06-10 01:31:22,527] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-06-10 01:31:23,880] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-06-10 01:31:31,738] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-06-10 01:31:32,227] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-06-10 01:31:32,305] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-06-10 01:31:32,368] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-06-10 01:31:32,457] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-06-10 01:31:32,869] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-06-10 01:31:34,816] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-06-10 01:31:34,925] [pool-1-thread-7] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-06-10 01:31:34,988] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-06-10 01:31:35,332] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-06-10 01:31:35,533] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-06-10 01:31:35,803] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-06-10 01:31:43,783] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-06-10 01:31:43,839] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-06-10 01:31:45,031] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-06-10 01:31:45,856] [pool-1-thread-5] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-06-10 01:31:47,065] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-06-10 01:31:47,345] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-06-10 01:31:47,708] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-06-10 01:31:48,147] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-06-10 01:31:49,398] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-06-10 01:31:49,741] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-06-10 01:31:50,783] [pool-1-thread-7] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-06-10 01:31:51,895] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-06-10 01:31:58,589] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-06-10 01:31:59,154] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-06-10 01:32:00,709] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 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20150828_0007.ome.tif: [testng] [2024-06-10 01:33:19,749] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-06-10 01:33:20,395] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-06-10 01:33:21,003] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-06-10 01:33:21,160] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-06-10 01:33:22,368] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-06-10 01:33:22,759] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-06-10 01:33:23,538] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-06-10 01:33:24,452] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-06-10 01:33:33,001] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 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[pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-06-10 01:33:54,561] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-06-10 01:33:57,063] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-06-10 01:33:57,579] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-06-10 01:33:58,243] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-06-10 01:33:58,700] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-06-10 01:33:59,460] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-06-10 01:33:59,957] [pool-1-thread-3] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-06-10 01:34:45,169] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-06-10 01:34:45,481] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-06-10 01:34:47,975] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-06-10 01:34:48,247] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-06-10 01:34:49,474] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-06-10 01:34:58,356] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-06-10 01:34:59,005] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-06-10 01:35:00,252] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-06-10 01:35:01,409] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-06-10 01:35:02,076] [pool-1-thread-2] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-06-10 01:35:02,566] [pool-1-thread-12] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-06-10 01:35:22,755] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-06-10 01:35:32,757] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-06-10 01:35:32,802] [pool-1-thread-5] Initializing /data/qa-17919/f10187.oir: [testng] [2024-06-10 01:36:17,858] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-06-10 01:36:18,075] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-06-10 01:36:18,152] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-06-10 01:36:19,074] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-06-10 01:36:19,182] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-06-10 01:36:19,493] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-06-10 01:36:20,442] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-06-10 01:36:21,605] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-06-10 01:36:22,075] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-06-10 01:36:22,240] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-06-10 01:36:22,378] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-06-10 01:36:24,118] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-06-10 01:36:24,207] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-06-10 01:36:24,599] [pool-1-thread-2] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-06-10 01:36:30,790] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-06-10 01:36:31,085] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-06-10 01:36:31,931] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-06-10 01:36:32,831] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-06-10 01:36:33,786] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-06-10 01:36:38,766] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-06-10 01:36:39,954] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-06-10 01:36:43,885] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-06-10 01:36:43,965] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-06-10 01:36:44,753] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-06-10 01:36:44,880] [pool-1-thread-6] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-06-10 01:36:46,122] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-06-10 01:36:46,183] [pool-1-thread-1] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-06-10 01:36:46,756] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-06-10 01:36:47,373] [pool-1-thread-6] Initializing 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/data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-06-10 01:37:04,848] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-06-10 01:37:05,951] [pool-1-thread-10] Initializing /data/olympus/XYZt.oir: [testng] [2024-06-10 01:37:19,119] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-06-10 01:37:20,265] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-06-10 01:37:21,221] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-06-10 01:37:22,319] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-06-10 01:37:23,411] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-06-10 01:37:23,868] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-06-10 01:37:25,250] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-06-10 01:37:25,406] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-06-10 01:37:29,832] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-06-10 01:37:30,711] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-06-10 01:37:31,105] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-06-10 01:37:31,709] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-06-10 01:37:32,161] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-06-10 01:37:36,612] [pool-1-thread-6] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-06-10 01:37:37,898] [pool-1-thread-6] Initializing /data/qa-17917/f10010.oir: [testng] [2024-06-10 01:39:04,845] [pool-1-thread-4] Initializing /data/qa-17335/1.oir: [testng] [2024-06-10 01:39:05,610] [pool-1-thread-4] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-06-10 01:39:06,839] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-06-10 01:39:08,019] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-06-10 01:39:08,866] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-06-10 01:39:22,441] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] 02:33:08,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:33:08,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:08,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_02-33-08.log] [testng] 02:33:08,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 72 minutes 9 seconds Finished: SUCCESS