![[Jenkins]](/jenkins/static/0ce0ee70/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 88 originally caused by: Started by upstream project "Trigger" build number 99 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1665000407162611051.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_13446_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:56,126 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:56,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:23:56,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:56,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:56,130 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:56,130 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:56,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:56,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:56,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:56,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:56,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:56,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:56,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:56,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:56,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:56,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:56,489 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:56,489 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:56,489 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:56,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:56,490 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:23:56,491 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:23:56,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 360 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-10 01:23:56,510] [main] java.version = 1.8.0_342 [testng] 01:23:56,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:56,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:56,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_01-23-56.log] [testng] 01:23:56,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-10 01:23:56,575] [main] testng.directory = /data [testng] [2024-06-10 01:23:56,575] [main] testng.configDirectory = /config [testng] [2024-06-10 01:23:56,588] [main] testng.multiplier = 1.0 [testng] [2024-06-10 01:23:56,588] [main] testng.in-memory = false [testng] [2024-06-10 01:23:56,588] [main] testng.allow-missing = false [testng] [2024-06-10 01:23:56,589] [main] user.language = fr [testng] [2024-06-10 01:23:56,589] [main] user.country = FR [testng] [2024-06-10 01:23:56,589] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-10 01:23:57,229] [main] ---------------------------------------- [testng] [2024-06-10 01:23:57,229] [main] Total files: 31 [testng] [2024-06-10 01:23:57,230] [main] Scan time: 0.64 s (20 ms/file) [testng] [2024-06-10 01:23:57,230] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-10 01:23:59,142] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:23:59,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:59,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-10_01-23-59.log] [testng] 01:23:59,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d98bf30 - End of configuration. [testng] [2024-06-10 01:23:59,168] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:23:59,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:59,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-10_01-23-59.log] [testng] 01:23:59,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79495e19 - End of configuration. [testng] [2024-06-10 01:23:59,178] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:23:59,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:59,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-10_01-23-59.log] [testng] 01:23:59,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aacd6c7 - End of configuration. [testng] [2024-06-10 01:23:59,187] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:23:59,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:59,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-10_01-23-59.log] [testng] 01:23:59,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f962faf - End of configuration. [testng] [2024-06-10 01:23:59,196] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:23:59,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:59,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-10_01-23-59.log] [testng] 01:23:59,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35797170 - End of configuration. [testng] [2024-06-10 01:23:59,208] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:23:59,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:59,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-10_01-23-59.log] [testng] 01:23:59,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6668e3 - End of configuration. [testng] [2024-06-10 01:23:59,216] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:23:59,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:59,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-10_01-23-59.log] [testng] 01:23:59,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6712d145 - End of configuration. [testng] [2024-06-10 01:23:59,230] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:23:59,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:59,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-10_01-23-59.log] [testng] 01:23:59,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50344b3f - End of configuration. [testng] [2024-06-10 01:23:59,238] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:23:59,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:59,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-10_01-23-59.log] [testng] 01:23:59,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d511bcd - End of configuration. [testng] [2024-06-10 01:23:59,257] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:23:59,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:59,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-10_01-23-59.log] [testng] 01:23:59,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18fd912e - End of configuration. [testng] [2024-06-10 01:23:59,274] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:23:59,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:59,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-10_01-23-59.log] [testng] 01:23:59,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@561895fa - End of configuration. [testng] [2024-06-10 01:23:59,285] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:23:59,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:59,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-10_01-23-59.log] [testng] 01:23:59,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35367a55 - End of configuration. [testng] [2024-06-10 01:24:01,417] [pool-1-thread-6] Initializing /data/curtis/image1.bmp: [testng] [2024-06-10 01:24:01,422] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp: [testng] [2024-06-10 01:24:01,429] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-06-10 01:24:01,434] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-06-10 01:24:01,439] [pool-1-thread-2] Initializing /data/curtis/image2.bmp: [testng] [2024-06-10 01:24:01,444] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-06-10 01:24:01,450] [pool-1-thread-8] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-06-10 01:24:01,460] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-06-10 01:24:01,466] [pool-1-thread-1] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-06-10 01:24:01,960] [pool-1-thread-6] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-06-10 01:24:02,045] [pool-1-thread-2] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-06-10 01:24:02,562] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-06-10 01:24:02,568] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-06-10 01:24:02,613] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-06-10 01:24:02,617] [pool-1-thread-7] Initializing /data/curtis/image4.bmp: [testng] [2024-06-10 01:24:02,637] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-06-10 01:24:02,852] [pool-1-thread-12] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-06-10 01:24:02,883] [pool-1-thread-7] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-06-10 01:24:03,006] [pool-1-thread-1] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS