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Started by upstream project "BIOFORMATS-test-repo" build number 88 originally caused by: Started by upstream project "Trigger" build number 99 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9631404738568887879.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_13448_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:24:26,488 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:24:26,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:24:26,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:26,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:26,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:24:26,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:24:26,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:24:26,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:26,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:26,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:24:26,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:24:26,496 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:24:26,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:26,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:26,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:26,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:26,853 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:26,853 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:26,853 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:26,854 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:26,854 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:24:26,855 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:24:26,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 360 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-10 01:24:26,865] [main] java.version = 1.8.0_342 [testng] 01:24:26,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:26,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:26,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_01-24-26.log] [testng] 01:24:26,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-10 01:24:26,920] [main] testng.directory = /data [testng] [2024-06-10 01:24:26,920] [main] testng.configDirectory = /config [testng] [2024-06-10 01:24:26,936] [main] testng.multiplier = 1.0 [testng] [2024-06-10 01:24:26,937] [main] testng.in-memory = false [testng] [2024-06-10 01:24:26,937] [main] testng.allow-missing = false [testng] [2024-06-10 01:24:26,937] [main] user.language = fr [testng] [2024-06-10 01:24:26,937] [main] user.country = FR [testng] [2024-06-10 01:24:26,937] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-10 01:24:39,464] [main] ---------------------------------------- [testng] [2024-06-10 01:24:39,464] [main] Total files: 226 [testng] [2024-06-10 01:24:39,464] [main] Scan time: 12.527 s (55 ms/file) [testng] [2024-06-10 01:24:39,464] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-10 01:24:49,367] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:24:49,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:49,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-10_01-24-49.log] [testng] 01:24:49,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ea63f91 - End of configuration. [testng] [2024-06-10 01:24:49,431] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:24:49,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:49,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-10_01-24-49.log] [testng] 01:24:49,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c6ce2d - End of configuration. [testng] [2024-06-10 01:24:49,448] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:24:49,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:49,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-10_01-24-49.log] [testng] 01:24:49,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dea89e - End of configuration. [testng] [2024-06-10 01:24:49,469] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:24:49,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:49,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-10_01-24-49.log] [testng] 01:24:49,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a7462c - End of configuration. [testng] [2024-06-10 01:24:49,478] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:24:49,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:49,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-10_01-24-49.log] [testng] 01:24:49,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@389d3a4b - End of configuration. [testng] [2024-06-10 01:24:49,521] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:24:49,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:49,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-10_01-24-49.log] [testng] 01:24:49,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689a6c9e - End of configuration. [testng] [2024-06-10 01:24:49,560] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:24:49,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:49,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-10_01-24-49.log] [testng] 01:24:49,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2422e094 - End of configuration. [testng] [2024-06-10 01:24:49,587] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:24:49,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:49,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-10_01-24-49.log] [testng] 01:24:49,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437a0520 - End of configuration. [testng] [2024-06-10 01:24:49,599] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:24:49,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:49,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-10_01-24-49.log] [testng] 01:24:49,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3895890b - End of configuration. [testng] [2024-06-10 01:24:49,665] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:24:49,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:49,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-10_01-24-49.log] [testng] 01:24:49,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e04d0e5 - End of configuration. [testng] [2024-06-10 01:24:49,672] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:24:49,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:49,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-10_01-24-49.log] [testng] 01:24:49,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1710bb35 - End of configuration. [testng] [2024-06-10 01:24:49,681] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:24:49,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:49,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:49,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-10_01-24-49.log] [testng] 01:24:49,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@641933db - End of configuration. [testng] [2024-06-10 01:24:52,393] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-06-10 01:24:52,489] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-06-10 01:24:52,582] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-06-10 01:24:52,597] [pool-1-thread-6] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-06-10 01:24:52,605] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-06-10 01:24:52,630] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-06-10 01:24:52,688] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-06-10 01:24:52,693] [pool-1-thread-2] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-06-10 01:24:52,699] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-06-10 01:24:52,709] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-06-10 01:24:52,716] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-06-10 01:24:53,047] [pool-1-thread-7] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-06-10 01:24:53,084] [pool-1-thread-2] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-06-10 01:24:53,125] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-06-10 01:24:53,169] [pool-1-thread-9] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-06-10 01:24:53,223] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS