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Started by upstream project "BIOFORMATS-test-repo" build number 88 originally caused by: Started by upstream project "Trigger" build number 99 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5621014214900850381.sh + '[' gatan-dm2 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_13488_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:44:56,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:44:56,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:44:56,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:56,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:56,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:44:56,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:44:56,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:44:56,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:56,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:56,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:44:56,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:44:56,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:44:57,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:44:57,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:44:57,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:44:57,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:44:57,096 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:44:57,097 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:44:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:44:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:44:57,097 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:44:57,098 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:44:57,098 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-10 01:44:57,108] [main] java.version = 1.8.0_342 [testng] 01:44:57,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:44:57,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:57,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_01-44-57.log] [testng] 01:44:57,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-10 01:44:57,160] [main] testng.directory = /data [testng] [2024-06-10 01:44:57,160] [main] testng.configDirectory = /config [testng] [2024-06-10 01:44:57,172] [main] testng.multiplier = 1.0 [testng] [2024-06-10 01:44:57,173] [main] testng.in-memory = false [testng] [2024-06-10 01:44:57,173] [main] testng.allow-missing = false [testng] [2024-06-10 01:44:57,173] [main] user.language = fr [testng] [2024-06-10 01:44:57,173] [main] user.country = FR [testng] [2024-06-10 01:44:57,173] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-10 01:44:58,039] [main] ---------------------------------------- [testng] [2024-06-10 01:44:58,039] [main] Total files: 25 [testng] [2024-06-10 01:44:58,040] [main] Scan time: 0.866 s (34 ms/file) [testng] [2024-06-10 01:44:58,040] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-10 01:44:58,960] [pool-1-thread-1] Initializing /data/imagic/1-1.dm2: [testng] 01:44:58,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:44:58,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:58,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-10_01-44-58.log] [testng] 01:44:58,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@263e96dc - End of configuration. [testng] [2024-06-10 01:44:58,986] [pool-1-thread-12] Initializing /data/pang/grating025k.dm2: [testng] 01:44:58,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:44:58,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:58,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-10_01-44-58.log] [testng] 01:44:58,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e07f15f - End of configuration. [testng] [2024-06-10 01:44:58,998] [pool-1-thread-11] Initializing /data/pang/unproc-auto: [testng] 01:44:58,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:44:58,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:58,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-10_01-44-58.log] [testng] 01:44:58,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6668e3 - End of configuration. [testng] [2024-06-10 01:44:59,010] [pool-1-thread-10] Initializing /data/pang/10500x-o4: [testng] 01:44:59,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:44:59,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-10_01-44-59.log] [testng] 01:44:59,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f531603 - End of configuration. [testng] [2024-06-10 01:44:59,025] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini_preview.png: [testng] 01:44:59,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:44:59,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-10_01-44-59.log] [testng] 01:44:59,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8b80ea - End of configuration. [testng] [2024-06-10 01:44:59,030] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: [testng] 01:44:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:44:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-10_01-44-59.log] [testng] 01:44:59,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed47ee7 - End of configuration. [testng] [2024-06-10 01:44:59,034] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: [testng] 01:44:59,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:44:59,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-10_01-44-59.log] [testng] 01:44:59,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35367a55 - End of configuration. [testng] [2024-06-10 01:44:59,039] [pool-1-thread-6] Initializing /data/imagic/13008.dm2: [testng] 01:44:59,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:44:59,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-10_01-44-59.log] [testng] 01:44:59,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89d2fc3 - End of configuration. [testng] [2024-06-10 01:44:59,052] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: [testng] 01:44:59,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:44:59,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-10_01-44-59.log] [testng] 01:44:59,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15e45103 - End of configuration. [testng] [2024-06-10 01:44:59,057] [pool-1-thread-4] Initializing /data/pang/signed: [testng] 01:44:59,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:44:59,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-10_01-44-59.log] [testng] 01:44:59,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64b35cae - End of configuration. [testng] [2024-06-10 01:44:59,067] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: [testng] 01:44:59,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:44:59,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-10_01-44-59.log] [testng] 01:44:59,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4335176e - End of configuration. [testng] [2024-06-10 01:44:59,073] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: [testng] 01:44:59,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:44:59,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-10_01-44-59.log] [testng] 01:44:59,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@400e28d0 - End of configuration. [testng] [2024-06-10 01:45:00,183] [pool-1-thread-2] Initializing /data/pang/DLMeD2E1_010500x03.dm2: [testng] [2024-06-10 01:45:00,193] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: [testng] [2024-06-10 01:45:00,196] [pool-1-thread-5] Initializing /data/imagic/TEM 10118.dm2: [testng] [2024-06-10 01:45:00,205] [pool-1-thread-4] Initializing /data/imagic/not read correctly/Zucchini.dm2: [testng] [2024-06-10 01:45:00,211] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: [testng] [2024-06-10 01:45:00,214] [pool-1-thread-12] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS