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Started by upstream project "BIOFORMATS-test-repo" build number 88 originally caused by: Started by upstream project "Trigger" build number 99 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9113707759521904157.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_13506_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:57:36,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:57:36,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:57:36,849 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:36,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:36,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:57:36,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:57:36,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:57:36,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:36,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:36,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:57:36,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:57:36,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:57:37,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:57:37,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:57:37,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:57:37,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:57:37,137 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:57:37,137 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:57:37,137 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:57:37,138 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:57:37,138 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:57:37,139 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:57:37,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-10 01:57:37,149] [main] java.version = 1.8.0_342 [testng] 01:57:37,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:57:37,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:37,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_01-57-37.log] [testng] 01:57:37,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-10 01:57:37,207] [main] testng.directory = /data [testng] [2024-06-10 01:57:37,207] [main] testng.configDirectory = /config [testng] [2024-06-10 01:57:37,220] [main] testng.multiplier = 1.0 [testng] [2024-06-10 01:57:37,220] [main] testng.in-memory = false [testng] [2024-06-10 01:57:37,221] [main] testng.allow-missing = false [testng] [2024-06-10 01:57:37,221] [main] user.language = fr [testng] [2024-06-10 01:57:37,221] [main] user.country = FR [testng] [2024-06-10 01:57:37,221] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-10 02:04:39,115] [main] ---------------------------------------- [testng] [2024-06-10 02:04:39,115] [main] Total files: 7329 [testng] [2024-06-10 02:04:39,116] [main] Scan time: 421.894 s (57 ms/file) [testng] [2024-06-10 02:04:39,116] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-10 02:07:27,913] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:07:27,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:27,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:27,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-10_02-07-27.log] [testng] 02:07:27,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@142b819a - End of configuration. [testng] [2024-06-10 02:07:27,971] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:07:27,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:27,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:27,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-10_02-07-27.log] [testng] 02:07:27,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c6934b5 - End of configuration. [testng] [2024-06-10 02:07:27,996] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:07:27,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:27,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:27,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-10_02-07-27.log] [testng] 02:07:27,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c937df0 - End of configuration. [testng] [2024-06-10 02:07:28,019] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:07:28,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:28,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-10_02-07-28.log] [testng] 02:07:28,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f4a275 - End of configuration. [testng] [2024-06-10 02:07:28,080] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:07:28,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:28,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-10_02-07-28.log] [testng] 02:07:28,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@185540c8 - End of configuration. [testng] [2024-06-10 02:07:28,161] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:07:28,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:28,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-10_02-07-28.log] [testng] 02:07:28,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6427a644 - End of configuration. [testng] [2024-06-10 02:07:28,195] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:07:28,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:28,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-10_02-07-28.log] [testng] 02:07:28,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ffba42 - End of configuration. [testng] [2024-06-10 02:07:28,278] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:07:28,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:28,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-10_02-07-28.log] [testng] 02:07:28,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6491626d - End of configuration. [testng] [2024-06-10 02:07:28,367] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:07:28,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:28,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-10_02-07-28.log] [testng] 02:07:28,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2517e335 - End of configuration. [testng] [2024-06-10 02:07:28,440] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:07:28,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:28,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-10_02-07-28.log] [testng] 02:07:28,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@381b3859 - End of configuration. [testng] [2024-06-10 02:07:28,484] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:07:28,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:28,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-10_02-07-28.log] [testng] 02:07:28,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba87790 - End of configuration. [testng] [2024-06-10 02:07:29,128] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:07:29,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:29,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:29,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-10_02-07-29.log] [testng] 02:07:29,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bd5cf88 - End of configuration. [testng] [2024-06-10 02:07:30,703] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-10 02:07:32,749] [pool-1-thread-12] Initializing /data/josh/2101to600astk.stk: [testng] [2024-06-10 02:07:41,584] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-10 02:07:41,835] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-06-10 02:07:41,931] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-10 02:07:42,005] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-10 02:07:42,116] [pool-1-thread-2] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-10 02:07:42,283] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:07:42,334] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-10 02:07:42,426] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-10 02:07:42,722] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-10 02:07:43,210] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-10 02:07:44,096] [pool-1-thread-6] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-10 02:07:44,158] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-10 02:07:44,370] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-10 02:07:44,570] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-10 02:07:44,600] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-06-10 02:07:44,658] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-10 02:07:44,734] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-10 02:07:44,787] [pool-1-thread-9] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-10 02:07:44,963] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-10 02:07:45,077] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-10 02:07:45,119] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-10 02:07:45,346] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-10 02:07:45,405] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-10 02:07:45,423] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-10 02:07:45,611] [pool-1-thread-7] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-10 02:07:45,781] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-06-10 02:07:45,847] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-10 02:07:45,958] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-06-10 02:07:46,003] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-10 02:07:46,004] [pool-1-thread-5] Initializing /data/thomas/test.tif: [testng] [2024-06-10 02:07:46,219] [pool-1-thread-2] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-06-10 02:07:46,639] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-06-10 02:07:46,682] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-10 02:07:46,692] [pool-1-thread-5] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-10 02:07:46,953] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-10 02:07:47,171] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-10 02:07:47,276] [pool-1-thread-7] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-06-10 02:07:47,678] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-10 02:07:47,694] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-10 02:07:47,764] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-10 02:07:49,357] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-10 02:07:49,418] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-10 02:07:49,433] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-10 02:07:49,536] [pool-1-thread-6] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-10 02:07:49,892] [pool-1-thread-3] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-10 02:07:50,338] [pool-1-thread-9] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-10 02:07:50,398] [pool-1-thread-2] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-10 02:07:50,710] [pool-1-thread-9] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-10 02:07:50,841] [pool-1-thread-6] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-10 02:07:53,245] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-10 02:07:53,311] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-10 02:07:53,952] [pool-1-thread-10] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-10 02:07:54,311] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-10 02:07:54,842] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-10 02:07:54,887] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-10 02:07:55,145] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-10 02:07:56,053] [pool-1-thread-10] Initializing /data/dave/Z Series.stk: [testng] [2024-06-10 02:07:56,181] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-10 02:07:56,337] [pool-1-thread-5] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-10 02:07:56,919] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-06-10 02:07:57,255] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-10 02:07:57,812] [pool-1-thread-1] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-10 02:07:57,866] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-10 02:07:57,953] [pool-1-thread-3] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-10 02:07:58,339] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-10 02:07:58,466] [pool-1-thread-3] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-06-10 02:08:01,582] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-10 02:08:01,602] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-10 02:08:01,779] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:02,104] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:02,154] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-10 02:08:02,284] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-06-10 02:08:02,352] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-10 02:08:03,026] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-10 02:08:03,252] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-10 02:08:03,639] [pool-1-thread-4] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-10 02:08:03,904] [pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-10 02:08:04,282] [pool-1-thread-5] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-10 02:08:04,521] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-06-10 02:08:06,797] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:06,862] [pool-1-thread-11] Initializing /data/josh/2101to600e.stk: [testng] [2024-06-10 02:08:07,697] [pool-1-thread-3] Initializing /data/samples/zseries.stk: [testng] [2024-06-10 02:08:08,337] [pool-1-thread-3] Initializing /data/grant/X.STK: [testng] [2024-06-10 02:08:08,456] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-10 02:08:09,260] [pool-1-thread-8] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-10 02:08:09,307] [pool-1-thread-6] Initializing /data/samples/10xcalib.tif: [testng] [2024-06-10 02:08:09,331] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-10 02:08:09,512] [pool-1-thread-2] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-10 02:08:09,861] [pool-1-thread-6] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-06-10 02:08:10,653] [pool-1-thread-6] Initializing /data/samples/diatoms3d.stk: [testng] [2024-06-10 02:08:10,704] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-06-10 02:08:11,308] [pool-1-thread-2] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-10 02:08:11,663] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-10 02:08:11,717] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-10 02:08:11,986] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-10 02:08:12,044] [pool-1-thread-4] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-10 02:08:12,697] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-10 02:08:13,017] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-10 02:08:13,080] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:13,373] [pool-1-thread-4] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-10 02:08:13,976] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-10 02:08:14,337] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:14,758] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-10 02:08:14,863] [pool-1-thread-8] Initializing /data/ascb/golgi marker.tif: [testng] [2024-06-10 02:08:14,915] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-10 02:08:15,731] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-10 02:08:15,801] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-06-10 02:08:15,867] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-10 02:08:16,088] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-06-10 02:08:16,222] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-10 02:08:16,290] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-06-10 02:08:16,673] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-06-10 02:08:17,111] [pool-1-thread-11] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-10 02:08:17,292] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-10 02:08:17,376] [pool-1-thread-3] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-10 02:08:17,630] [pool-1-thread-2] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-10 02:08:17,732] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-10 02:08:18,359] [pool-1-thread-11] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-06-10 02:08:34,519] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:34,739] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-10 02:08:36,680] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-10 02:08:36,791] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-10 02:08:38,461] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-10 02:08:38,679] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-10 02:08:39,003] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-10 02:08:39,928] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-10 02:08:39,984] [pool-1-thread-5] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-10 02:08:40,256] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-06-10 02:08:40,368] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-10 02:08:40,449] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-10 02:08:41,319] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-10 02:08:41,477] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-10 02:08:41,918] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-10 02:08:43,257] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-10 02:08:44,290] [pool-1-thread-1] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-10 02:08:44,620] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-10 02:08:44,659] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-10 02:08:45,226] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-10 02:08:45,289] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-10 02:08:45,554] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-10 02:08:45,696] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-10 02:08:47,179] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-10 02:08:48,379] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-10 02:08:48,467] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-06-10 02:08:48,845] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-10 02:08:48,928] [pool-1-thread-7] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-10 02:08:49,932] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-10 02:08:49,998] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-10 02:08:50,662] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-10 02:08:51,325] [pool-1-thread-5] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-10 02:08:51,414] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-06-10 02:08:51,461] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-10 02:08:51,495] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-10 02:08:51,646] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-10 02:08:52,726] [pool-1-thread-12] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-10 02:08:54,217] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-10 02:08:54,782] [pool-1-thread-8] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-10 02:08:55,102] [pool-1-thread-8] Initializing /data/jerome/deconv.STK: [testng] [2024-06-10 02:08:55,862] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-10 02:08:55,958] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-10 02:08:56,397] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-10 02:08:56,885] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-06-10 02:08:56,954] [pool-1-thread-7] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-10 02:08:57,394] [pool-1-thread-8] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-10 02:08:57,745] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-06-10 02:08:57,820] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-10 02:08:58,304] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-10 02:08:59,073] [pool-1-thread-11] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-10 02:08:59,403] [pool-1-thread-7] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-10 02:08:59,664] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:09:00,193] [pool-1-thread-3] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-06-10 02:09:00,362] [pool-1-thread-11] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-10 02:09:01,959] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-10 02:09:03,172] [pool-1-thread-7] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-10 02:09:03,336] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:09:03,671] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-10 02:09:03,910] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-10 02:09:04,148] [pool-1-thread-7] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-10 02:09:04,621] [pool-1-thread-8] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-10 02:09:04,786] [pool-1-thread-3] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-10 02:09:04,921] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-10 02:09:05,124] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-10 02:09:05,277] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-10 02:09:05,658] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-10 02:09:05,732] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-10 02:09:06,137] [pool-1-thread-6] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-10 02:09:06,243] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-10 02:09:06,270] [pool-1-thread-7] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 46 seconds Finished: SUCCESS