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Started by upstream project "BIOFORMATS-test-repo" build number 88 originally caused by: Started by upstream project "Trigger" build number 99 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins6999535326378241044.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_13538_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:17:05,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:17:05,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:17:05,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:17:05,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:17:05,580 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:17:05,580 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:17:05,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:17:05,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:17:05,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:17:05,581 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:17:05,581 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:17:05,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:17:05,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:17:05,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:17:05,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:17:05,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:17:05,851 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:17:05,851 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:17:05,851 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:17:05,852 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:17:05,852 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:17:05,853 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:17:05,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-10 02:17:05,863] [main] java.version = 1.8.0_342 [testng] 02:17:05,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:17:05,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:05,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-10_02-17-05.log] [testng] 02:17:05,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-10 02:17:05,917] [main] testng.directory = /data [testng] [2024-06-10 02:17:05,917] [main] testng.configDirectory = /config [testng] [2024-06-10 02:17:05,935] [main] testng.multiplier = 1.0 [testng] [2024-06-10 02:17:05,936] [main] testng.in-memory = false [testng] [2024-06-10 02:17:05,936] [main] testng.allow-missing = false [testng] [2024-06-10 02:17:05,936] [main] user.language = fr [testng] [2024-06-10 02:17:05,936] [main] user.country = FR [testng] [2024-06-10 02:17:05,936] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-10 02:17:13,254] [main] ---------------------------------------- [testng] [2024-06-10 02:17:13,254] [main] Total files: 67 [testng] [2024-06-10 02:17:13,254] [main] Scan time: 7.318 s (109 ms/file) [testng] [2024-06-10 02:17:13,254] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-10 02:17:36,543] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 02:17:36,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:36,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-10_02-17-36.log] [testng] 02:17:36,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f509539 - End of configuration. [testng] [2024-06-10 02:17:36,584] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims: [testng] 02:17:36,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:36,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-10_02-17-36.log] [testng] 02:17:36,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@318603d7 - End of configuration. [testng] [2024-06-10 02:17:36,600] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:17:36,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:36,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-10_02-17-36.log] [testng] 02:17:36,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@193e4a4b - End of configuration. [testng] [2024-06-10 02:17:36,612] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims: [testng] 02:17:36,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:36,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-10_02-17-36.log] [testng] 02:17:36,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5606d73a - End of configuration. [testng] [2024-06-10 02:17:36,627] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:17:36,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:36,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-10_02-17-36.log] [testng] 02:17:36,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18efa285 - End of configuration. [testng] [2024-06-10 02:17:36,662] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: [testng] 02:17:36,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:36,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-10_02-17-36.log] [testng] 02:17:36,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8f72c2 - End of configuration. [testng] [2024-06-10 02:17:36,673] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims: [testng] 02:17:36,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:36,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-10_02-17-36.log] [testng] 02:17:36,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a83f0fc - End of configuration. [testng] [2024-06-10 02:17:36,685] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 02:17:36,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:36,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-10_02-17-36.log] [testng] 02:17:36,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459fd591 - End of configuration. [testng] [2024-06-10 02:17:36,698] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims: [testng] 02:17:36,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:36,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-10_02-17-36.log] [testng] 02:17:36,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34d9daeb - End of configuration. [testng] [2024-06-10 02:17:36,773] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:17:36,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:36,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-10_02-17-36.log] [testng] 02:17:36,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39a3ccbb - End of configuration. [testng] [2024-06-10 02:17:36,809] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 02:17:36,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:17:36,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-10_02-17-36.log] [testng] 02:17:36,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c7abc4b - End of configuration. [testng] [2024-06-10 02:17:36,864] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 02:17:36,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:17:36,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-10_02-17-36.log] [testng] 02:17:36,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fa8a2f6 - End of configuration. [testng] [2024-06-10 02:17:38,876] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0012.ims: [testng] [2024-06-10 02:17:38,888] [pool-1-thread-8] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] [2024-06-10 02:17:38,928] [pool-1-thread-6] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims: [testng] [2024-06-10 02:17:38,955] [pool-1-thread-10] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] [2024-06-10 02:17:38,997] [pool-1-thread-12] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: [testng] [2024-06-10 02:17:39,033] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0010.ims: [testng] [2024-06-10 02:17:39,054] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0006.ims: [testng] [2024-06-10 02:17:39,661] [pool-1-thread-3] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-06-10 02:17:39,712] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0014.ims: [testng] [2024-06-10 02:17:39,721] [pool-1-thread-7] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF_IMS3.ims: [testng] [2024-06-10 02:17:39,866] [pool-1-thread-4] Initializing /data/qa-4898/o383_1_457_CS_r1.ims: [testng] [2024-06-10 02:17:40,130] [pool-1-thread-11] Initializing /data/public/eliana/retina_large.ims: BUILD SUCCESSFUL Total time: 1 minute 38 seconds Finished: SUCCESS