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Started by upstream project "BIOFORMATS-test-repo" build number 89 originally caused by: Started by upstream project "Trigger" build number 100 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins7223059393276524929.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13597_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:21:55,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:55,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:21:55,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:55,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:55,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:55,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:55,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:55,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:55,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:55,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:55,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:55,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:55,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:55,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:55,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:55,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:55,384 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:55,384 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:55,384 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:55,385 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:55,385 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:21:55,386 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:21:55,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-11 01:21:55,398] [main] java.version = 11.0.16 [testng] 01:21:55,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:55,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:55,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-11_01-21-55.log] [testng] 01:21:55,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-11 01:21:55,462] [main] testng.directory = /data [testng] [2024-06-11 01:21:55,462] [main] testng.configDirectory = /config [testng] [2024-06-11 01:21:55,476] [main] testng.multiplier = 1.0 [testng] [2024-06-11 01:21:55,478] [main] testng.in-memory = false [testng] [2024-06-11 01:21:55,478] [main] testng.allow-missing = false [testng] [2024-06-11 01:21:55,478] [main] user.language = en [testng] [2024-06-11 01:21:55,478] [main] user.country = ${user.country} [testng] [2024-06-11 01:21:55,478] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-11 01:22:03,465] [main] ---------------------------------------- [testng] [2024-06-11 01:22:03,465] [main] Total files: 4424 [testng] [2024-06-11 01:22:03,466] [main] Scan time: 7.987 s (1 ms/file) [testng] [2024-06-11 01:22:03,466] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-11 01:24:09,585] [pool-1-thread-1] Initializing /data/bene/3d-example-stack.tif: [testng] 01:24:09,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:09,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-11_01-24-09.log] [testng] 01:24:09,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c1a8806 - End of configuration. [testng] [2024-06-11 01:24:09,676] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] 01:24:09,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:09,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-11_01-24-09.log] [testng] 01:24:09,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2224232a - End of configuration. [testng] [2024-06-11 01:24:09,711] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] 01:24:09,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:09,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-11_01-24-09.log] [testng] 01:24:09,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61675baf - End of configuration. [testng] [2024-06-11 01:24:09,742] [pool-1-thread-10] Initializing /data/josiah/cell-Z10.C1.tiff: [testng] 01:24:09,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:09,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-11_01-24-09.log] [testng] 01:24:09,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b58378 - End of configuration. [testng] [2024-06-11 01:24:09,789] [pool-1-thread-9] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] 01:24:09,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:09,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-11_01-24-09.log] [testng] 01:24:09,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4623f593 - End of configuration. [testng] [2024-06-11 01:24:09,833] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 01:24:09,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:09,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-11_01-24-09.log] [testng] 01:24:09,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2de1925 - End of configuration. [testng] [2024-06-11 01:24:09,911] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] 01:24:09,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:09,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-11_01-24-09.log] [testng] 01:24:09,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@526b741a - End of configuration. [testng] [2024-06-11 01:24:09,941] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] 01:24:09,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:09,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-11_01-24-09.log] [testng] 01:24:09,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1742f96c - End of configuration. [testng] [2024-06-11 01:24:09,982] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] 01:24:09,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:09,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:09,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-11_01-24-09.log] [testng] 01:24:09,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b7aceab - End of configuration. [testng] [2024-06-11 01:24:10,027] [pool-1-thread-4] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] 01:24:10,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:10,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:10,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-11_01-24-10.log] [testng] 01:24:10,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64872b49 - End of configuration. [testng] [2024-06-11 01:24:10,064] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z004.tif: [testng] 01:24:10,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:10,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:10,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-11_01-24-10.log] [testng] 01:24:10,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4227ffdb - End of configuration. [testng] [2024-06-11 01:24:10,112] [pool-1-thread-2] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] 01:24:10,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:10,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:10,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-11_01-24-10.log] [testng] 01:24:10,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b145920 - End of configuration. [testng] [2024-06-11 01:24:13,530] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-06-11 01:24:13,552] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-06-11 01:24:13,746] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] [2024-06-11 01:24:13,766] [pool-1-thread-1] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-06-11 01:24:13,882] [pool-1-thread-6] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-06-11 01:24:13,935] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-06-11 01:24:14,148] [pool-1-thread-4] Initializing /data/brian/MFGTMP_080902150001t001B02f73d2.TIF: [testng] [2024-06-11 01:24:14,202] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z011.tif: [testng] [2024-06-11 01:24:14,232] [pool-1-thread-10] Initializing /data/ascb/FND-13_PorterFranziniTransverse_4800.tif: [testng] [2024-06-11 01:24:15,770] [pool-1-thread-5] Initializing /data/alexa/test4.tif: [testng] [2024-06-11 01:24:15,958] [pool-1-thread-8] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-06-11 01:24:16,210] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-06-11 01:24:16,266] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x32.tiff: [testng] [2024-06-11 01:24:16,337] [pool-1-thread-7] Initializing /data/jonathan/XSEC-02.TIF: [testng] [2024-06-11 01:24:16,504] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-06-11 01:24:16,659] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z054.tif: [testng] [2024-06-11 01:24:16,695] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-06-11 01:24:16,771] [pool-1-thread-9] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-06-11 01:24:17,205] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-06-11 01:24:17,433] [pool-1-thread-7] Initializing /data/damian/21m.tiff: [testng] [2024-06-11 01:24:17,489] [pool-1-thread-12] Initializing /data/public/condensation/C4.pattern3.tif: [testng] [2024-06-11 01:24:17,882] [pool-1-thread-3] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-06-11 01:24:17,958] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-06-11 01:24:18,254] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-06-11 01:24:18,276] [pool-1-thread-6] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-06-11 01:24:18,497] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z030.tif: [testng] [2024-06-11 01:24:18,527] [pool-1-thread-5] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-06-11 01:24:19,045] [pool-1-thread-7] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-06-11 01:24:19,129] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-06-11 01:24:19,182] [pool-1-thread-4] Initializing /data/ascb/bad/FND-19_FawcettPhillipsSuccessive_4800.tif: [testng] [2024-06-11 01:24:19,248] [pool-1-thread-1] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-06-11 01:24:19,309] [pool-1-thread-3] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-06-11 01:24:19,617] [pool-1-thread-11] Initializing /data/ascb/CYT-77_PasolliMouse2_4800.tif: [testng] [2024-06-11 01:24:19,686] [pool-1-thread-9] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-06-11 01:24:19,933] [pool-1-thread-5] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-06-11 01:24:20,351] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2024-06-11 01:24:20,398] [pool-1-thread-12] Initializing 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[testng] [2024-06-11 01:26:06,881] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-06-11 01:26:06,964] [pool-1-thread-1] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-06-11 01:26:07,255] [pool-1-thread-7] Initializing /data/curtis/map/the-quick: [testng] [2024-06-11 01:26:07,289] [pool-1-thread-6] Initializing /data/pavel/Dmel/spim.pattern: [testng] [2024-06-11 01:26:08,536] [pool-1-thread-12] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-06-11 01:26:08,638] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-06-11 01:26:08,823] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z021.tif: [testng] [2024-06-11 01:26:09,098] [pool-1-thread-7] Initializing /data/josiah/cell-Z17.C0.tiff: [testng] [2024-06-11 01:26:09,189] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z035.tif: [testng] [2024-06-11 01:26:09,240] [pool-1-thread-1] Initializing 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Initializing /data/lzw/test.tif: [testng] [2024-06-11 01:26:10,766] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2024-06-11 01:26:10,992] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-06-11 01:26:11,157] [pool-1-thread-1] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-06-11 01:26:11,210] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-06-11 01:26:11,562] [pool-1-thread-10] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-06-11 01:26:13,555] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-06-11 01:26:13,618] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-06-11 01:26:13,762] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-06-11 01:26:13,830] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-06-11 01:26:13,893] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-06-11 01:26:14,360] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z013.tif: [testng] [2024-06-11 01:26:14,473] [pool-1-thread-3] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-06-11 01:26:14,505] [pool-1-thread-7] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-06-11 01:26:14,585] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP1.tiff: [testng] [2024-06-11 01:26:14,981] [pool-1-thread-5] Initializing /data/josiah/cell-Z18.C0.tiff: [testng] [2024-06-11 01:26:15,012] [pool-1-thread-1] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-06-11 01:26:15,104] [pool-1-thread-2] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-06-11 01:26:15,290] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-06-11 01:26:15,393] [pool-1-thread-3] Initializing /data/tom-kazimiers/test_noexiftool.tiff: [testng] [2024-06-11 01:26:15,546] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] [2024-06-11 01:26:15,792] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-06-11 01:26:15,847] [pool-1-thread-9] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-06-11 01:26:15,904] [pool-1-thread-1] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-06-11 01:26:16,199] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-06-11 01:26:16,246] [pool-1-thread-3] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-06-11 01:26:16,305] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-06-11 01:26:16,519] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-06-11 01:26:16,670] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-06-11 01:26:16,746] [pool-1-thread-2] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-06-11 01:26:17,013] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-06-11 01:26:17,072] [pool-1-thread-5] Initializing /data/misc/ms-paint.png: [testng] [2024-06-11 01:26:17,088] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-06-11 01:26:17,404] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z015.tif: [testng] [2024-06-11 01:26:17,494] [pool-1-thread-3] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-06-11 01:26:18,009] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-06-11 01:26:18,066] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] [2024-06-11 01:26:18,191] [pool-1-thread-4] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-06-11 01:26:18,389] [pool-1-thread-2] Initializing /data/damian/18m.tiff: [testng] [2024-06-11 01:26:18,487] [pool-1-thread-8] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-06-11 01:26:18,568] [pool-1-thread-7] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-06-11 01:26:18,684] [pool-1-thread-5] Initializing /data/big-images/2kx2k.tif: [testng] [2024-06-11 01:26:18,932] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-06-11 01:26:19,216] [pool-1-thread-7] Initializing /data/jeff/test36b.tif: [testng] [2024-06-11 01:26:19,377] [pool-1-thread-3] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-06-11 01:26:19,545] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-06-11 01:26:19,624] [pool-1-thread-7] Initializing /data/stephane/P014.tif: [testng] [2024-06-11 01:26:19,969] [pool-1-thread-3] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-06-11 01:26:19,997] [pool-1-thread-8] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-06-11 01:26:20,166] [pool-1-thread-2] Initializing /data/curtis/test1.tiff: [testng] [2024-06-11 01:26:20,443] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-06-11 01:26:20,497] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-06-11 01:26:20,734] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-06-11 01:26:20,814] [pool-1-thread-3] Initializing /data/edward/TestDoc2.tif: [testng] [2024-06-11 01:26:20,929] [pool-1-thread-7] Initializing /data/public/condensation/C4.pattern8.tif: [testng] [2024-06-11 01:26:21,001] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-06-11 01:26:21,166] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-06-11 01:26:21,438] [pool-1-thread-5] Initializing /data/martin/head.tif: [testng] [2024-06-11 01:26:21,589] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-06-11 01:26:21,695] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-06-11 01:26:21,775] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x48.tiff: [testng] [2024-06-11 01:26:21,799] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-06-11 01:26:22,096] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-06-11 01:26:22,162] [pool-1-thread-6] Initializing /data/public/condensation/A6.pattern3.tif: [testng] [2024-06-11 01:26:22,236] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-06-11 01:26:22,328] [pool-1-thread-2] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-06-11 01:26:22,492] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-06-11 01:26:22,811] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-06-11 01:26:22,867] [pool-1-thread-6] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-06-11 01:26:23,021] [pool-1-thread-1] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-06-11 01:26:23,142] [pool-1-thread-7] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-06-11 01:26:23,296] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-06-11 01:26:23,379] [pool-1-thread-8] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-06-11 01:26:23,436] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-06-11 01:26:23,779] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-06-11 01:26:23,880] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z047.tif: [testng] [2024-06-11 01:26:24,053] [pool-1-thread-5] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-06-11 01:26:24,258] [pool-1-thread-8] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-06-11 01:26:24,349] [pool-1-thread-1] Initializing /data/josiah/cell-Z26.C1.tiff: [testng] [2024-06-11 01:26:24,725] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-06-11 01:26:24,842] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-06-11 01:26:24,932] [pool-1-thread-1] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-06-11 01:26:25,148] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z042.tif: [testng] [2024-06-11 01:26:25,302] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-06-11 01:26:25,328] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-06-11 01:26:25,560] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-06-11 01:26:25,820] [pool-1-thread-2] Initializing /data/curtis/clown.tif: [testng] [2024-06-11 01:26:25,872] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-06-11 01:26:26,184] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2024-06-11 01:26:26,308] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-06-11 01:26:26,338] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z001.tif: [testng] [2024-06-11 01:26:26,615] [pool-1-thread-7] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-06-11 01:26:26,810] [pool-1-thread-3] Initializing /data/misc/mri-stack.tif: [testng] [2024-06-11 01:26:26,967] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z060.tif: [testng] [2024-06-11 01:26:27,339] [pool-1-thread-2] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2024-06-11 01:26:27,549] [pool-1-thread-3] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-06-11 01:26:27,679] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-06-11 01:26:28,002] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-06-11 01:26:28,066] [pool-1-thread-7] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-06-11 01:26:28,272] [pool-1-thread-3] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-06-11 01:26:28,819] [pool-1-thread-2] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-06-11 01:26:29,046] [pool-1-thread-3] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-06-11 01:26:30,090] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-06-11 01:26:30,264] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-06-11 01:26:30,539] [pool-1-thread-5] Initializing /data/josiah/cell-Z12.C0.tiff: [testng] [2024-06-11 01:26:30,600] [pool-1-thread-6] Initializing /data/curtis/images24.tiff: [testng] [2024-06-11 01:26:30,643] [pool-1-thread-8] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-06-11 01:26:30,976] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-06-11 01:26:31,069] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] [2024-06-11 01:26:31,101] [pool-1-thread-6] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-06-11 01:26:31,154] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-06-11 01:26:31,382] [pool-1-thread-8] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-06-11 01:26:31,438] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-06-11 01:26:31,561] [pool-1-thread-6] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Red.tif: [testng] [2024-06-11 01:26:32,000] [pool-1-thread-2] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-06-11 01:26:32,060] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 5 seconds Finished: SUCCESS