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Started by upstream project "BIOFORMATS-test-repo" build number 89
originally caused by:
 Started by upstream project "Trigger" build number 100
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11893065885410928040.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13645_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:37:19,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:37:19,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:37:19,851 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:37:19,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:37:19,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:37:19,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:37:19,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:37:19,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:37:19,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:37:19,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:37:19,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:37:19,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:37:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:37:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:37:20,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:37:20,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:37:20,044 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:37:20,044 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:37:20,044 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:37:20,044 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:37:20,044 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:37:20,045 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:37:20,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-11 01:37:20,054] [main] java.version = 11.0.16
   [testng] 01:37:20,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:37:20,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:20,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-11_01-37-20.log]
   [testng] 01:37:20,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-06-11 01:37:20,116] [main] testng.directory = /data
   [testng] [2024-06-11 01:37:20,116] [main] testng.configDirectory = /config
   [testng] [2024-06-11 01:37:20,127] [main] testng.multiplier = 1.0
   [testng] [2024-06-11 01:37:20,129] [main] testng.in-memory = false
   [testng] [2024-06-11 01:37:20,129] [main] testng.allow-missing = false
   [testng] [2024-06-11 01:37:20,129] [main] user.language = en
   [testng] [2024-06-11 01:37:20,129] [main] user.country = ${user.country}
   [testng] [2024-06-11 01:37:20,129] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-06-11 01:37:21,126] [main] ----------------------------------------
   [testng] [2024-06-11 01:37:21,126] [main] Total files: 20
   [testng] [2024-06-11 01:37:21,127] [main] Scan time: 0.997 s (49 ms/file)
   [testng] [2024-06-11 01:37:21,127] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-11 01:37:21,588] [pool-1-thread-1] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] 01:37:21,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:37:21,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-11_01-37-21.log]
   [testng] 01:37:21,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc8f49a - End of configuration.
   [testng] [2024-06-11 01:37:21,611] [pool-1-thread-12] Initializing /data/ascb/c191.st: 
   [testng] 01:37:21,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:37:21,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-11_01-37-21.log]
   [testng] 01:37:21,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40763c5f - End of configuration.
   [testng] [2024-06-11 01:37:21,628] [pool-1-thread-11] Initializing /data/dan/two.mrc: 
   [testng] 01:37:21,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:37:21,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-11_01-37-21.log]
   [testng] 01:37:21,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2875682b - End of configuration.
   [testng] [2024-06-11 01:37:21,648] [pool-1-thread-10] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] 01:37:21,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:37:21,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-11_01-37-21.log]
   [testng] 01:37:21,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24689eeb - End of configuration.
   [testng] [2024-06-11 01:37:21,679] [pool-1-thread-9] Initializing /data/samples/golgi.mrc: 
   [testng] 01:37:21,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:37:21,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-11_01-37-21.log]
   [testng] 01:37:21,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1516e912 - End of configuration.
   [testng] [2024-06-11 01:37:21,713] [pool-1-thread-8] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 01:37:21,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:37:21,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-11_01-37-21.log]
   [testng] 01:37:21,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@484a66c3 - End of configuration.
   [testng] [2024-06-11 01:37:21,728] [pool-1-thread-7] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 01:37:21,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:37:21,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-11_01-37-21.log]
   [testng] 01:37:21,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3948f91c - End of configuration.
   [testng] [2024-06-11 01:37:21,737] [pool-1-thread-6] Initializing /data/ascb/514_9903.mrc: 
   [testng] 01:37:21,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:37:21,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-11_01-37-21.log]
   [testng] 01:37:21,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629bcc5b - End of configuration.
   [testng] [2024-06-11 01:37:21,764] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 01:37:21,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:37:21,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-11_01-37-21.log]
   [testng] 01:37:21,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f395f6 - End of configuration.
   [testng] [2024-06-11 01:37:21,782] [pool-1-thread-4] Initializing /data/jcb/thylakoid5.rec: 
   [testng] 01:37:21,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:37:21,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-11_01-37-21.log]
   [testng] 01:37:21,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7e14b1 - End of configuration.
   [testng] [2024-06-11 01:37:21,794] [pool-1-thread-3] Initializing /data/dan/one.mrc: 
   [testng] 01:37:21,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:37:21,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-11_01-37-21.log]
   [testng] 01:37:21,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9e4250 - End of configuration.
   [testng] [2024-06-11 01:37:21,817] [pool-1-thread-2] Initializing /data/ascb/cfa1071.mrc: 
   [testng] 01:37:21,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:37:21,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:21,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-11_01-37-21.log]
   [testng] 01:37:21,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690419a6 - End of configuration.
   [testng] [2024-06-11 01:37:23,331] [pool-1-thread-7] Initializing /data/ascb/c191ali.mrc: 
   [testng] [2024-06-11 01:37:23,341] [pool-1-thread-1] Initializing /data/dan/three.mrc: 
   [testng] [2024-06-11 01:37:23,355] [pool-1-thread-9] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] [2024-06-11 01:37:23,366] [pool-1-thread-8] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] [2024-06-11 01:37:23,377] [pool-1-thread-5] Initializing /data/strand/Series1_A.mrc: 
   [testng] [2024-06-11 01:37:23,388] [pool-1-thread-12] Initializing /data/samples/1160.mrc: 
   [testng] [2024-06-11 01:37:23,488] [pool-1-thread-4] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] [2024-06-11 01:37:23,783] [pool-1-thread-9] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS