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Started by upstream project "BIOFORMATS-test-repo" build number 9 originally caused by: Started by upstream project "Trigger" build number 12 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins11165524914923527896.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1367_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:12:17,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:12:17,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:12:17,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:12:17,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:12:17,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:12:17,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:12:17,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:12:17,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:12:17,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:12:17,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:12:17,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:12:17,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:12:18,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:12:18,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:12:18,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:12:18,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:12:18,071 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:12:18,071 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:12:18,071 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:12:18,072 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:12:18,072 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:12:18,073 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:12:18,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-23 01:12:18,082] [main] java.version = 11.0.16 [testng] 01:12:18,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:12:18,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:12:18,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-23_01-12-18.log] [testng] 01:12:18,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-23 01:12:18,133] [main] testng.directory = /data [testng] [2024-03-23 01:12:18,133] [main] testng.configDirectory = /config [testng] [2024-03-23 01:12:18,144] [main] testng.multiplier = 1.0 [testng] [2024-03-23 01:12:18,145] [main] testng.in-memory = false [testng] [2024-03-23 01:12:18,145] [main] testng.allow-missing = false [testng] [2024-03-23 01:12:18,145] [main] user.language = en [testng] [2024-03-23 01:12:18,145] [main] user.country = ${user.country} [testng] [2024-03-23 01:12:18,146] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-23 01:20:23,582] [main] ---------------------------------------- [testng] [2024-03-23 01:20:23,582] [main] Total files: 7329 [testng] [2024-03-23 01:20:23,582] [main] Scan time: 485.436 s (66 ms/file) [testng] [2024-03-23 01:20:23,582] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-23 01:25:47,289] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 01:25:47,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:47,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:47,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-23_01-25-47.log] [testng] 01:25:47,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d1d5b46 - End of configuration. [testng] [2024-03-23 01:25:48,150] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-23 01:25:48,156] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 01:25:48,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:48,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:48,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-23_01-25-48.log] [testng] 01:25:48,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cf538fb - End of configuration. [testng] [2024-03-23 01:25:51,002] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 01:25:51,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:51,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:51,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-23_01-25-51.log] [testng] 01:25:51,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cefbcb5 - End of configuration. [testng] [2024-03-23 01:25:51,528] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 01:25:51,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:51,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:51,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-23_01-25-51.log] [testng] 01:25:51,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a994328 - End of configuration. [testng] [2024-03-23 01:25:51,951] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 01:25:51,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:51,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:51,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-23_01-25-51.log] [testng] 01:25:51,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b1deb2 - End of configuration. [testng] [2024-03-23 01:25:52,422] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-23 01:25:52,424] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 01:25:52,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:52,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:52,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-23_01-25-52.log] [testng] 01:25:52,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fde99e6 - End of configuration. [testng] [2024-03-23 01:25:52,776] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 01:25:52,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:52,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:52,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-23_01-25-52.log] [testng] 01:25:52,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e41541 - End of configuration. [testng] [2024-03-23 01:25:53,195] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:25:53,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:53,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:53,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-23_01-25-53.log] [testng] 01:25:53,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21f67b8a - End of configuration. [testng] [2024-03-23 01:25:53,569] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 01:25:53,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:53,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:53,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-23_01-25-53.log] [testng] 01:25:53,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dd6d9c8 - End of configuration. [testng] [2024-03-23 01:25:54,060] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-23 01:25:54,063] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 01:25:54,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:54,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:54,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-23_01-25-54.log] [testng] 01:25:54,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f465a3 - End of configuration. [testng] [2024-03-23 01:25:54,480] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 01:25:54,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:54,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:54,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-23_01-25-54.log] [testng] 01:25:54,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f388b6f - End of configuration. [testng] [2024-03-23 01:25:54,979] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 01:25:54,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:54,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:54,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-23_01-25-54.log] [testng] 01:25:54,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3932afc6 - End of configuration. [testng] [2024-03-23 01:25:59,370] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-23 01:25:59,848] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-23 01:26:00,307] [pool-1-thread-10] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-23 01:26:00,795] [pool-1-thread-11] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-23 01:26:01,322] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-23 01:26:01,884] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-23 01:26:04,453] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-23 01:26:05,745] [pool-1-thread-8] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-23 01:26:06,275] [pool-1-thread-4] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-23 01:26:06,719] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-23 01:26:08,869] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-23 01:26:10,685] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-23 01:26:11,604] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-03-23 01:26:12,074] [pool-1-thread-10] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-23 01:26:13,242] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-23 01:26:13,894] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-23 01:26:14,238] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-23 01:26:15,020] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-23 01:26:15,619] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-23 01:26:17,530] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-23 01:26:17,958] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-23 01:26:19,650] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-23 01:26:20,199] [pool-1-thread-10] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-23 01:26:21,352] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-23 01:26:21,765] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-23 01:26:22,240] [pool-1-thread-5] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-23 01:26:28,240] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-23 01:26:28,721] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-23 01:26:29,191] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-23 01:26:29,634] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2024-03-23 01:26:31,488] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-23 01:26:33,278] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-23 01:26:34,019] [pool-1-thread-6] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-23 01:26:34,729] [pool-1-thread-1] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-23 01:26:36,405] [pool-1-thread-3] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-23 01:26:36,819] [pool-1-thread-11] Initializing /data/samples/zserEight.stk: [testng] [2024-03-23 01:26:37,604] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-23 01:26:39,313] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:26:40,406] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-23 01:26:40,877] [pool-1-thread-6] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-23 01:26:58,221] [pool-1-thread-3] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-23 01:26:58,804] [pool-1-thread-12] Initializing /data/samples/zser24.stk: [testng] [2024-03-23 01:26:59,258] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-23 01:27:01,165] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-23 01:27:01,893] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:27:03,443] [pool-1-thread-12] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-23 01:27:06,737] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-23 01:27:07,291] [pool-1-thread-11] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-23 01:27:07,775] [pool-1-thread-7] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-23 01:27:08,561] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-23 01:27:09,607] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-23 01:27:10,976] [pool-1-thread-12] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-03-23 01:27:16,536] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-23 01:27:17,966] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-03-23 01:27:18,758] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:27:20,329] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-23 01:27:21,962] [pool-1-thread-2] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-23 01:27:22,493] [pool-1-thread-11] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-23 01:27:23,900] [pool-1-thread-1] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-23 01:27:24,440] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-03-23 01:27:24,948] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-23 01:27:25,320] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-23 01:27:26,889] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:27:27,679] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-23 01:27:30,386] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-23 01:27:31,726] [pool-1-thread-3] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-23 01:27:38,485] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-23 01:27:40,332] [pool-1-thread-5] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-23 01:27:41,341] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-23 01:27:41,811] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-23 01:27:42,277] [pool-1-thread-7] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-23 01:27:44,068] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-23 01:27:44,992] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-23 01:27:46,097] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-23 01:27:46,708] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-23 01:27:48,499] [pool-1-thread-2] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-23 01:27:49,048] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-23 01:27:49,408] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-23 01:27:49,885] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-23 01:27:50,928] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-23 01:27:51,484] [pool-1-thread-5] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-23 01:27:57,705] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-23 01:27:58,971] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-23 01:27:59,447] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-23 01:28:02,527] [pool-1-thread-2] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-23 01:28:05,349] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-23 01:28:05,955] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-23 01:28:05,968] [pool-1-thread-11] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-23 01:28:06,593] [pool-1-thread-1] Initializing 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01:28:42,715] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-23 01:28:43,356] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-23 01:28:44,213] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-03-23 01:28:44,965] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:28:46,510] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-23 01:28:47,617] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-23 01:28:50,974] [pool-1-thread-2] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-23 01:28:51,873] [pool-1-thread-11] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-23 01:28:55,548] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-23 01:28:56,528] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-23 01:28:58,589] [pool-1-thread-5] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-23 01:28:59,474] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-23 01:29:00,908] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-23 01:29:01,972] [pool-1-thread-10] Initializing /data/jerome/deconv.STK: [testng] [2024-03-23 01:29:03,113] [pool-1-thread-5] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-23 01:29:04,026] [pool-1-thread-11] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-23 01:29:05,637] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:29:21,502] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-23 01:29:23,172] [pool-1-thread-5] Initializing /data/thomas/test.tif: [testng] [2024-03-23 01:29:23,597] [pool-1-thread-7] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-23 01:29:25,740] [pool-1-thread-11] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-23 01:29:27,303] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-23 01:29:29,265] [pool-1-thread-5] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-23 01:29:31,599] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-23 01:29:32,294] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-23 01:29:32,334] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-23 01:29:39,221] [pool-1-thread-1] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-23 01:29:40,637] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-23 01:29:41,993] [pool-1-thread-5] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-23 01:29:42,643] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-23 01:29:47,675] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-23 01:29:54,599] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-23 01:29:56,762] [pool-1-thread-5] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-23 01:30:01,805] [pool-1-thread-2] Initializing 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01:30:16,330] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-23 01:30:16,818] [pool-1-thread-11] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-23 01:30:17,485] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-23 01:30:19,082] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-23 01:30:21,030] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-03-23 01:30:21,971] [pool-1-thread-8] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-23 01:30:23,202] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-23 01:30:23,915] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-23 01:30:24,478] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-23 01:30:24,956] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-23 01:30:25,364] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-23 01:30:25,675] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-23 01:30:27,440] [pool-1-thread-2] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-23 01:30:29,222] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-23 01:30:30,495] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-23 01:30:31,586] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-23 01:30:33,127] [pool-1-thread-4] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-23 01:30:48,590] [pool-1-thread-8] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-03-23 01:30:50,327] [pool-1-thread-9] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-03-23 01:30:51,757] [pool-1-thread-11] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-23 01:30:53,506] [pool-1-thread-8] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-23 01:30:56,675] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-23 01:30:57,215] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-23 01:30:57,734] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-23 01:30:59,886] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-23 01:31:01,829] [pool-1-thread-9] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-23 01:31:03,159] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-23 01:31:07,463] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-23 01:31:08,970] [pool-1-thread-11] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-23 01:31:10,667] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-23 01:31:13,392] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-23 01:31:15,524] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-23 01:31:20,108] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-23 01:31:20,906] [pool-1-thread-10] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-23 01:31:25,368] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-23 01:31:28,515] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-23 01:31:29,240] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-23 01:31:29,468] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-23 01:31:31,467] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-23 01:31:36,094] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-23 01:31:41,686] [pool-1-thread-1] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-23 01:31:42,217] [pool-1-thread-11] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-23 01:31:44,974] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-23 01:31:45,530] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-23 01:31:52,374] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-23 01:31:55,998] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-23 01:31:56,828] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-23 01:31:57,490] [pool-1-thread-1] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-23 01:32:00,384] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-23 01:32:02,582] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-23 01:32:04,956] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-23 01:32:10,480] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-23 01:32:11,549] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-23 01:32:14,555] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-23 01:32:15,836] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-23 01:32:16,847] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-23 01:32:20,497] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-23 01:32:21,440] [pool-1-thread-1] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-23 01:32:27,728] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-23 01:32:28,797] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-23 01:32:30,498] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-23 01:32:31,562] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-23 01:32:32,085] [pool-1-thread-11] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 69 minutes 46 seconds Finished: SUCCESS