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Started by upstream project "BIOFORMATS-test-repo" build number 2 originally caused by: Started by upstream project "Trigger" build number 3 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17161696100589858688.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_137_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:19:19,933 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:19:19,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:19:19,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:19:19,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:19:19,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:19:19,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:19:19,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:19:19,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:19:19,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:19:19,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:19:19,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:19:19,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:19:20,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:19:20,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:19:20,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:19:20,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:19:20,181 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:19:20,181 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:19:20,181 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:19:20,182 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:19:20,182 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:19:20,183 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:19:20,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-15 00:19:20,192] [main] java.version = 1.8.0_342 [testng] 00:19:20,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:19:20,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:20,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_00-19-20.log] [testng] 00:19:20,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-15 00:19:20,240] [main] testng.directory = /data [testng] [2024-03-15 00:19:20,241] [main] testng.configDirectory = /config [testng] [2024-03-15 00:19:20,252] [main] testng.multiplier = 1.0 [testng] [2024-03-15 00:19:20,252] [main] testng.in-memory = false [testng] [2024-03-15 00:19:20,252] [main] testng.allow-missing = false [testng] [2024-03-15 00:19:20,252] [main] user.language = en [testng] [2024-03-15 00:19:20,252] [main] user.country = ${user.country} [testng] [2024-03-15 00:19:20,252] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-15 00:19:21,379] [main] ---------------------------------------- [testng] [2024-03-15 00:19:21,379] [main] Total files: 103 [testng] [2024-03-15 00:19:21,379] [main] Scan time: 1.127 s (10 ms/file) [testng] [2024-03-15 00:19:21,379] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-15 00:19:36,370] [pool-1-thread-1] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] 00:19:36,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:19:36,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_00-19-36.log] [testng] 00:19:36,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79e56ef3 - End of configuration. [testng] [2024-03-15 00:19:36,440] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] 00:19:36,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:19:36,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_00-19-36.log] [testng] 00:19:36,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a0137b3 - End of configuration. [testng] [2024-03-15 00:19:36,482] [pool-1-thread-11] Initializing /data/jay/ViewDMtest.dm3: [testng] 00:19:36,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:19:36,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_00-19-36.log] [testng] 00:19:36,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26760b24 - End of configuration. [testng] [2024-03-15 00:19:36,529] [pool-1-thread-10] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] 00:19:36,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:19:36,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_00-19-36.log] [testng] 00:19:36,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e6d60b0 - End of configuration. [testng] [2024-03-15 00:19:36,577] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] 00:19:36,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:19:36,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_00-19-36.log] [testng] 00:19:36,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5030880e - End of configuration. [testng] [2024-03-15 00:19:36,644] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] 00:19:36,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:19:36,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_00-19-36.log] [testng] 00:19:36,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e987b8b - End of configuration. [testng] [2024-03-15 00:19:36,709] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] 00:19:36,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:19:36,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:36,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_00-19-36.log] [testng] 00:19:36,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4999265d - End of configuration. [testng] [2024-03-15 00:19:37,095] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] 00:19:37,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:19:37,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:37,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_00-19-37.log] [testng] 00:19:37,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb278b6 - End of configuration. [testng] [2024-03-15 00:19:37,143] [pool-1-thread-5] Initializing /data/jay/recAmaghi.dm3: [testng] 00:19:37,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:19:37,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:37,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_00-19-37.log] [testng] 00:19:37,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377882be - End of configuration. [testng] [2024-03-15 00:19:37,186] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] 00:19:37,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:19:37,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:37,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_00-19-37.log] [testng] 00:19:37,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c29db4a - End of configuration. [testng] [2024-03-15 00:19:37,268] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e5.tif: [testng] 00:19:37,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:19:37,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:37,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_00-19-37.log] [testng] 00:19:37,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3330d115 - End of configuration. [testng] [2024-03-15 00:19:37,638] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] 00:19:37,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:19:37,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:37,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_00-19-37.log] [testng] 00:19:37,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@117c92b1 - End of configuration. [testng] [2024-03-15 00:19:41,232] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-03-15 00:19:41,971] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-03-15 00:19:42,361] [pool-1-thread-3] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-03-15 00:19:43,051] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-03-15 00:19:44,615] [pool-1-thread-6] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-03-15 00:19:44,662] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-03-15 00:19:44,714] [pool-1-thread-5] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-03-15 00:19:44,765] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-03-15 00:19:44,817] [pool-1-thread-11] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-03-15 00:19:46,126] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-03-15 00:19:46,789] [pool-1-thread-6] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-03-15 00:19:47,117] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-03-15 00:19:47,971] [pool-1-thread-10] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-03-15 00:19:48,134] [pool-1-thread-3] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-03-15 00:19:48,527] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-03-15 00:19:51,003] [pool-1-thread-5] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-03-15 00:19:51,134] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-03-15 00:19:51,949] [pool-1-thread-8] Initializing /data/qa-7642/8.dm4: [testng] [2024-03-15 00:19:52,040] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-03-15 00:19:53,277] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-03-15 00:19:53,501] [pool-1-thread-8] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-03-15 00:19:53,702] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-03-15 00:19:54,025] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-03-15 00:19:54,133] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-03-15 00:19:54,917] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-03-15 00:19:55,636] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-03-15 00:19:55,809] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-03-15 00:19:56,446] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-03-15 00:19:56,546] [pool-1-thread-10] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-03-15 00:19:57,334] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-03-15 00:19:58,878] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-03-15 00:19:59,355] [pool-1-thread-8] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-03-15 00:19:59,795] [pool-1-thread-3] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-03-15 00:20:00,259] [pool-1-thread-10] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-03-15 00:20:00,920] [pool-1-thread-7] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-03-15 00:20:01,324] [pool-1-thread-6] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-03-15 00:20:02,084] [pool-1-thread-12] Initializing /data/samples/test-tiles.dm3: [testng] [2024-03-15 00:20:02,221] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-03-15 00:20:03,344] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-03-15 00:20:03,484] [pool-1-thread-12] Initializing /data/jay/dnasample1.dm3: [testng] [2024-03-15 00:20:03,638] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-03-15 00:20:03,726] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-03-15 00:20:06,378] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-03-15 00:20:06,568] [pool-1-thread-10] Initializing /data/jay/dnasample.tif: [testng] [2024-03-15 00:20:07,075] [pool-1-thread-8] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-03-15 00:20:07,450] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-03-15 00:20:07,509] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-03-15 00:20:08,080] [pool-1-thread-7] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-03-15 00:20:08,550] [pool-1-thread-4] Initializing /data/qa-21761/example.dm4: [testng] [2024-03-15 00:20:09,519] [pool-1-thread-12] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-03-15 00:20:09,858] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-03-15 00:20:10,235] [pool-1-thread-4] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-03-15 00:20:10,893] [pool-1-thread-5] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-03-15 00:20:11,029] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-03-15 00:20:11,350] [pool-1-thread-8] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-03-15 00:20:11,497] [pool-1-thread-1] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-03-15 00:20:12,563] [pool-1-thread-7] Initializing /data/jay/DMtest.dm3: [testng] [2024-03-15 00:20:12,799] [pool-1-thread-3] Initializing /data/jay/DMtest2.dm3: [testng] [2024-03-15 00:20:12,866] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-03-15 00:20:13,125] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-03-15 00:20:13,225] [pool-1-thread-5] Initializing /data/jay/camtest1.dm3: [testng] [2024-03-15 00:20:13,634] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-03-15 00:20:14,045] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-03-15 00:20:14,214] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-03-15 00:20:14,442] [pool-1-thread-10] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-03-15 00:20:14,828] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-03-15 00:20:15,106] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-03-15 00:20:15,269] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-03-15 00:20:15,606] [pool-1-thread-10] Initializing /data/ofra/lowloss.dm3: [testng] [2024-03-15 00:20:15,808] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-03-15 00:20:15,881] [pool-1-thread-8] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-03-15 00:20:16,060] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-03-15 00:20:16,698] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-03-15 00:20:16,919] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-03-15 00:20:17,394] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-03-15 00:20:17,527] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-03-15 00:20:17,637] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-03-15 00:20:19,315] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-03-15 00:20:19,511] [pool-1-thread-3] Initializing /data/melissa/annotation-test.tif: [testng] [2024-03-15 00:20:20,113] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-03-15 00:20:20,367] [pool-1-thread-7] Initializing /data/jay/smallerfile.dm3: [testng] [2024-03-15 00:20:20,473] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-03-15 00:20:20,770] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-03-15 00:20:21,039] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-03-15 00:20:21,126] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-03-15 00:20:21,256] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 17 seconds Finished: SUCCESS